Add Pillow to requirements

Otherwise one receives an error saying TIF not supported when making heatmaps:

you mean add pillow as an import?

in the requirements.txt should do it? i didn't modify your code, but received that error then did a "pip install pillow" then reran the same code and the error disappeared i suspect it may be an "optional" dependency for the other libraries so isn't it automatically installed when doing pip install -r requirements.txt

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On Sat, Nov 16, 2019 at 2:01 PM John-William Sidhom < ***@***.***> wrote: you mean add pillow as an import? — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#21?email_source=notifications&email_token=ACJ3XTALEWWWEW4EWHP7MNLQT7VLFA5CNFSM4JOEEYVKYY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGOEEHRAQY#issuecomment-554635331>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ACJ3XTHA4B3ZOLDZAEPTCJDQT7VLFANCNFSM4JOEEYVA> .

got it

updated requirements.txt file. Now when you install, pip should also install all dependencies as well except for PhenoGraph which needs to be installed separately.

actually, you can add:

git+https://github.com/jacoblevine/phenograph.git

to the requirements.txt list and it will install it as well

btw, currently on line 19:

DeepTCR/requirements.txt

Line 19 in becc96b

PhenoGraph==1.5.2

there is an effort to load phenograph, which ends up causing an error:

  Could not find a version that satisfies the requirement PhenoGraph==1.5.2 (from -r requirements.txt (line 19)) (from versions: )
No matching distribution found for PhenoGraph==1.5.2 (from -r requirements.txt (line 19))

so it turns out when running the setup.py file, it can only install packages on pypi. I'm having difficulty getting the setup.py file to install phenograph with that command in the requirements.txt file