sidhomj/DeepTCR

Issues

• Issue loading single cell data

  #85 opened 3 months ago by leeanapeters
  1

• more detailed tutorials or instructions

  #84 opened 6 months ago by arnavaz
  0

• Download with docker

  #54 opened 3 years ago by Portulaca666
  2

• Recommendations for handling large datasets

  #83 opened a year ago by leeanapeters
  1

• Question about dropout rate

  #82 opened a year ago by emm1R
  0

• Optimization of the threshold parameter in hierarchical clustering

  #81 opened a year ago by CharlineJnnt
  1

• Understanding Training Strategy of Supervised TCR repertoire classification on HIV dataset

  #80 opened a year ago by Albert-Shuai
  0

• Performance

  #75 opened 2 years ago by zshu000000
  0

• sequence_inference error

  #67 opened 2 years ago by Albert-Shuai
  6

• Suggestion for UMAP_Plot() function

  #71 opened 2 years ago by psimps21
  0

• Shared Motif for Clusters after Phenograph clustering

  #69 opened 2 years ago by jkbenotmane
  0

• load previous-trained model

  #66 opened 2 years ago by hereagain-Y
  3

• Tutorial: Clustering TCR Sequences list index out of Range Error when using DeepTCR in WSL

  #53 opened 3 years ago by jkbenotmane
  1

• No Sample Labels on Dendrogramplots

  #55 opened 3 years ago by jkbenotmane
  0

• The dataset used in the regression model

  #57 opened 3 years ago by zguo235
  3

• Can´t load own Data using DTCR_SS.Get_Data

  #65 opened 2 years ago by junyho486
  7

• How to export latent feature matrix resulted by VAE training

  #60 opened 3 years ago by Lijizhou2022
  4

• Getting an import error when running 'from DeepTCR.DeepTCR import DeepTCR_U'

  #59 opened 3 years ago by dstcr
  1

• Extract accuracy of decoded TCRs from Sequence_inference

  #56 opened 3 years ago by JulianSpagnuolo
  1

• Sequence not featurized

  #51 opened 3 years ago by fbenedett
  7

• run DeepTCR using more than one GPUs

  #47 opened 3 years ago by qidi-yang
  3

• Inquiry about Fig2.c Motifs Visualization in DeepTCR

  #50 opened 3 years ago by pzhang84
  1

• Interpreting Sequence_Inference output

  #46 opened 3 years ago by CurlsForScience
  2

• -

  #42 opened 3 years ago by jkbenotmane
  0

• Availability of trained models

  #40 opened 3 years ago by jannisborn
  1

• Reproducible clustering

  #36 opened 4 years ago by emm1R
  5

• 'LabelEncoder' object has no attribute 'classes_' when loading own data

  #25 opened 4 years ago by GBeattie
  2

• ValueError when running "8 - VAE Inference" in unsupervised tutorials

  #30 opened 4 years ago by marrojwala
  1

• Information

  #33 opened 4 years ago by sinnamone
  1

• Question about incomplete data

  #35 opened 4 years ago by emm1R
  4

• Error when changing max_length

  #34 opened 4 years ago by emm1R
  4

• Tensor shape mismatch while running "2 - Supervised Repertoire Classification" Tutorial

  #29 opened 4 years ago by marrojwala
  2

• Add Pillow to requirements

  #21 opened 5 years ago by choosehappy
  6

• matched alpha beta

  #11 opened 5 years ago by hejing3283
  3

• Wrong sklearn version

  #17 opened 5 years ago by choosehappy
  1

• Clustering error

  #20 opened 5 years ago by choosehappy
  15

• Error while running tutorial

  #18 opened 5 years ago by choosehappy
  3

• Error while running 6 - KNN classification tutorial

  #19 opened 5 years ago by choosehappy
  3

• KNN_Sequence_Classifier

  #9 opened 5 years ago by hejing3283
  4

• example input hla files

  #8 opened 5 years ago by hejing3283
  5

• KNN_Repertoire_Classifer Error

  #10 opened 5 years ago by hejing3283
  2

• Heatmap save to file output blank file

  #6 opened 5 years ago by hejing3283
  13

• parallele for KNN

  #7 opened 5 years ago by hejing3283
  3

• DeepTCR_WF object has no attribute 'Y'

  #5 opened 5 years ago by hejing3283
  10

• Clustering by phenograph error

  #1 opened 5 years ago by hejing3283
  2

• VAE AUC violin plot Y-axis value >1

  #3 opened 5 years ago by hejing3283
  3

• supervised learning example 2 error

  #2 opened 5 years ago by hejing3283
  12

• Supervised learning train error: need at least one array to concatenate

  #4 opened 5 years ago by hejing3283
  12