Pinned Repositories
epi-SHARE-seq-pipeline
Epigenomics Program pipeline to analyze SHARE-seq data.
atac-seq-pipeline
ENCODE ATAC-seq pipeline
chip-seq-pipeline2
ENCODE ChIP-seq pipeline
COVID-19
Exploring different ways to use data collected from COVID19; data provided by JHU CSSE
cromwell
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
dockstore-tool-bamstats
A repo for the BAMStats command, used as the tutorial for Dockstore
encode_utils
Tools that are useful to any ENCODE submitting group.
nanopore-analysis
Data exploration and analysis of a set of Oxford Nanopore reads.
spike-in
Data Analysis of ChIP-seq spike-in
window-swap-extension
Google chrome extension to WindowSnap
sidwekhande's Repositories
sidwekhande/atac-seq-pipeline
ENCODE ATAC-seq pipeline
sidwekhande/chip-seq-pipeline2
ENCODE ChIP-seq pipeline
sidwekhande/COVID-19
Exploring different ways to use data collected from COVID19; data provided by JHU CSSE
sidwekhande/cromwell
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
sidwekhande/dockstore-tool-bamstats
A repo for the BAMStats command, used as the tutorial for Dockstore
sidwekhande/encode_utils
Tools that are useful to any ENCODE submitting group.
sidwekhande/nanopore-analysis
Data exploration and analysis of a set of Oxford Nanopore reads.
sidwekhande/spike-in
Data Analysis of ChIP-seq spike-in
sidwekhande/window-swap-extension
Google chrome extension to WindowSnap
sidwekhande/gtex-pipeline
GTEx & TOPMed data production and analysis pipelines
sidwekhande/psubootcamp2019
Using GitHub in team projects
sidwekhande/rna-seq-pipeline
sidwekhande/sandbox
A repo for testing different bioinformatics analyses.
sidwekhande/scrnaseq-tutorials
scRNAseq tutorials from different sources
sidwekhande/seqspec
machine-readable file format for genomic library sequence and structure
sidwekhande/users-meeting-2020-workshop
sidwekhande/y2ave_seqspecs
Work in progress seqspecs for Y2AVE processing for IGVF