Citation: Bethany Signal, Brian S Gloss, Marcel E Dinger, Tim R Mercer; Machine learning annotation of human branchpoints, Bioinformatics, btx688, https://doi.org/10.1093/bioinformatics/btx688
This is the development version of branchpointer. For the current BioConductor version see:
https://bioconductor.org/packages/release/bioc/html/branchpointer.html or
https://github.com/Bioconductor-mirror/branchpointer
R-package branchpointer can be installed:
library(devtools)
install_github("betsig/branchpointer_dev")
After installation, the package can be loaded into R.
library(branchpointer_dev)
For details of how to use this package, please see the vignette.
branchpointer requires bedtools to be installed if using a local .fa file for sequence retrieval. Alternatively, an R BSgenome object can now be used (see vignette).
Package: branchpointer
Type: Package
Title: Prediction of intronic splicing branchpoints
Version: 1.4.1
Date: 2018-03-06
Author: Beth Signal
Maintainer: Beth Signal b.signal@garvan.org.au
Description: Predicts branchpoint probability for sites in intronic branchpoint windows. queries can be supplied as intronic regions; or to evaluate the effects of mutations, SNPs.