Pinned Repositories
scHLAcount
Count HLA alleles in single-cell RNA-seq data
STARsoloManuscript
Code for analyses in the STARsolo manuscript
DAESC
NGS
Next-Gen Sequencing tools from the Horvath Lab
Monopogen
SNV calling from single cell sequencing
SALSA
Single Cell Allele-Specific Analysis - Containerized tool for genotyping, phasing, mapping bias correction, and generation of single cell allele-specific counts
scATAK
2020-Advanced_Single_Cell_RNA_Seq
Building on material from Introduction to Single Cell RNA-Seq, this workshop aims to cover advanced topics, including TCR and trajectory analysis. Instruction in introductory analysis will not be provided.
cellsnp-lite
Efficient genotyping bi-allelic SNPs on single cells
singlecell_endodiff_paper
Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression
singcell's Repositories
singcell/2020-Advanced_Single_Cell_RNA_Seq
Building on material from Introduction to Single Cell RNA-Seq, this workshop aims to cover advanced topics, including TCR and trajectory analysis. Instruction in introductory analysis will not be provided.