HorvathLab/NGS

Issues

• ZL request

  #47 opened 3 months ago by smartinezzz
  0

• MB figure requests

  #46 opened 3 months ago by smartinezzz
  0

• ML project ideas for long reads

  #45 opened 4 months ago by smartinezzz
  0

• Express the ML SNV model using the log-ratio and MAF formula

  #44 opened 4 months ago by smartinezzz
  0

• ML SNVs - log-ratio and MAF formula

  #43 opened 4 months ago by smartinezzz
  0

• Run the best ML model on the 28 samples separately

  #39 opened 4 months ago by AneliaHorvath
  1

• Run the best ML model on DNA (germline+somatic) vs RNA

  #40 opened 4 months ago by AneliaHorvath
  1

• run the Model on the Nanopore output (from Vania), 1 sample

  #41 opened 4 months ago by AneliaHorvath
  1

• code review with Joe

  #42 opened 4 months ago by AneliaHorvath
  1

• 28 sets Run for N_VAR and N_REF

  #24 opened 5 months ago by AneliaHorvath
  1

• convert snv files into matrix form

  #22 opened 5 months ago by smartinezzz
  0

• scSNViz_1web

  #27 opened 5 months ago by AneliaHorvath
  1

• Get Tushar MGPC access

  #34 opened 6 months ago by smartinezzz
  0

• IGV_145 sceSNV from scVARloci

  #25 opened 7 months ago by AneliaHorvath
  0

• Implement transformer

  #36 opened 7 months ago by smartinezzz
  0

• class imbalance penalization

  #35 opened 7 months ago by smartinezzz
  0

• Run all samples together

  #33 opened 7 months ago by smartinezzz
  0

• LongReads_PacBio

  #32 opened 7 months ago by AneliaHorvath
  0

• LongReads_Nanopore

  #31 opened 7 months ago by AneliaHorvath
  0

• Reanalyze 10 scRNA-seq data to add to the 28 samples

  #30 opened 7 months ago by AneliaHorvath
  0

• CNVs_CopyKat for ML

  #29 opened 7 months ago by AneliaHorvath
  0

• WES_KyleandChiara

  #28 opened 7 months ago by AneliaHorvath
  0

• Mut_Signatures_4ML

  #26 opened 7 months ago by AneliaHorvath
  0

• LabTasks

  #23 opened 7 months ago by AneliaHorvath
  0

• SCExecute's Capability to Split Pooled BAM Files into Single-Cell BAMs

  #18 opened 7 months ago by Giovanna0806
  4

• Clarification on Workflow for SCReadCounts Application

  #20 opened 7 months ago by Giovanna0806
  0

• Allele-Specific Expression (ASE) from scRNA-seq dataset

  #19 opened 8 months ago by singcell
  4

• Screadcounts output file

  #17 opened 9 months ago by juniajvs
  7

• SCReadCounts only using one core

  #15 opened a year ago by Ilarius
  5

• Usage of scReadCounts for single nucleotide variant calling from 10X scRNAseq data of haploid genomes

  #13 opened a year ago by JesseRop
  2

• scVarLoci from cellranger 7.10

  #16 opened a year ago by gabrielascui
  8

• AssertionError

  #14 opened a year ago by Ilarius
  2

• Problem when .gz output file is present with the same name

  #12 opened 2 years ago by nigiord
  7

• CR:Z tag in the bam file

  #9 opened 2 years ago by eltonjrv
  7

• usage of table_browser_to_SCRC.py

  #8 opened 2 years ago by rosaranli
  11

• empty results from scReadCounts

  #4 opened 3 years ago by rosaranli
  8

• scReadCounts - Filter parameters?

  #7 opened 2 years ago by Romeo1-1
  4

• scReadCounts with strand information

  #6 opened 3 years ago by lucia-ramirez
  2

• Some confusions about scReadCount

  #5 opened 3 years ago by XUEbaogai0101
  2

• readCounts -G

  #3 opened 3 years ago by lucia-ramirez
  7

• Install scReadCounts

  #2 opened 3 years ago by lucia-ramirez
  2

• scReadCount: -G option

  #1 opened 4 years ago by vbruat
  4