singerma

Pinned Repositories

bcftools
This is the official development repository for BCFtools. To compile, the bcftools+calling branch of htslib is needed: git clone --branch=bcftools+calling git://github.com/samtools/htslib.git htslib
Language:C0 2 00
cgData
Python API to work with the cgData standard
Language:Python1 2 00
cramtools
Format specification and java implementation for next-gen data.
Language:Java0 2 00
dx-ccle-fpkm
DNAnexus platform applets to calculate expression levels from CCLE RNA-Seq data
Language:Python00
gatk
GATK Changes for TCGA Repository
Language:Java1 2 00
gatk-1
Official code repository for GATK versions 4 and up
Language:Java0 2 00
rnaseq_tutorial
An educational tutorial and working demonstration pipeline for RNA-seq analysis including an introduction to: cloud computing, next generation sequence file formats, reference genomes, gene annotation, expression analysis, differential expression analysis, alternative splicing analysis, data visualization, and interpretation.
Language:R0 2 00
storage-blobs-node-quickstart
Code for QuickStart article for accessing Blobs with Node JS
Language:JavaScript0 2 00
cgData
Python API to work with the cgData standard
Language:Python8 3 08

singerma's Repositories

singerma/cgData
Python API to work with the cgData standard
Language:Python1 2 00
singerma/gatk
GATK Changes for TCGA Repository
Language:Java1 2 00
singerma/bcftools
This is the official development repository for BCFtools. To compile, the bcftools+calling branch of htslib is needed: git clone --branch=bcftools+calling git://github.com/samtools/htslib.git htslib
Language:C0 2 00
singerma/cramtools
Format specification and java implementation for next-gen data.
Language:Java0 2 00
singerma/dx-ccle-fpkm
DNAnexus platform applets to calculate expression levels from CCLE RNA-Seq data
Language:Python00
singerma/gatk-1
Official code repository for GATK versions 4 and up
Language:Java0 2 00
singerma/rnaseq_tutorial
An educational tutorial and working demonstration pipeline for RNA-seq analysis including an introduction to: cloud computing, next generation sequence file formats, reference genomes, gene annotation, expression analysis, differential expression analysis, alternative splicing analysis, data visualization, and interpretation.
Language:R0 2 00
singerma/storage-blobs-node-quickstart
Code for QuickStart article for accessing Blobs with Node JS
Language:JavaScript0 2 00