sirpan

sirpan's Stars

• zervel3/IS-algorithm

  The algorithm to quantify individuals influence and susceptibility from individual interaction data

  Language:C4

• eugenebang/DREAMwalk

  The official code implementation for DREAMwalk in Python.

  Language:Python162

• kaist-sbml/MGP_prediction

  Language:Python21

• Zhu-BY/ALGE

  Repository of the paper "Precise influence evaluation in complex networks" by B. Zhu, D. Li and Q. Sun

  Language:Python12

• hhdo/TiPNN

  This is the official code release of the following paper: Hao Dong et al., Temporal Inductive Path Neural Network for Temporal Knowledge Graph Reasoning.

  Language:Python21

• Yiminghh/VertexEntanglement

  Language:Python122

• parthoBTK/Personalized_Liver_Models

  Scripts and wrappers for GSMM

  Language:MATLAB11

• opencobra/cobrapy

  COBRApy is a package for constraint-based modeling of metabolic networks.

  Language:Python460216

• sysbiolux/Helgueta_et_al_2023

  Companion repo for the article by Sergio Helgueta et al.

  1

• rdkit/mmpdb

  A package to identify matched molecular pairs and use them to predict property changes.

  Language:Python20055

• zyzisastudyreallyhardguy/Graph-Group-Discrimination

  Code for NeurIPS 2022 paper "Rethinking and Scaling Up Graph Contrastive Learning: An Extremely Efficient Approach with Group Discrimination"

  Language:Python545

• tianyu139/data-efficient-augmentation

  Code for Data-Efficient Augmentation for Training Neural Networks (NeurIPS 2022)

  Language:Python73

• autumn9999/MTC-with-Category-Shifts

  Language:Python111

• KChen-lab/METAFlux

  Language:HTML386

• SysBioChalmers/RAVEN

  The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.

  Language:MATLAB10052

• qLSLab/GPRuler

  GPRuler, an open-source computational framework to automate the reconstruction process of Gene-Protein-Reaction (GPR) rules within metabolic networks of a given organism based on the corresponding list of genes involved in catalysis of each metabolic reaction, and genes-to-reaction associations.

  Language:Python113

• SysBioChalmers/Human-GEM

  The generic genome-scale metabolic model of Homo sapiens

  Language:MATLAB9340

• csbl/ratcon1

  Reconciled rat and human metabolic networks for comparative toxicogenomics analyses and biomarker predictions

  Language:R73

• ATOMScience-org/AMPL

  The ATOM Modeling PipeLine (AMPL) is an open-source, modular, extensible software pipeline for building and sharing models to advance in silico drug discovery.

  Language:Jupyter Notebook13667

• d2l-ai/d2l-zh

  《动手学深度学习》：面向中文读者、能运行、可讨论。中英文版被70多个国家的500多所大学用于教学。

  Language:Python61.1k10.8k

• GaiZhenbiao/ChuanhuChatGPT

  GUI for ChatGPT API and many LLMs. Supports agents, file-based QA, GPT finetuning and query with web search. All with a neat UI.

  Language:Python15.1k2.3k

• ShaoQiBNU/stacking

  集成学习Stacking方法详解

  Language:Python5911

• ikki407/stacking

  Stacked Generalization (Ensemble Learning)

  Language:Python21676

• mldlproject/2021-iCYP-MFE

  Source code and data of the paper entitled "iCYP-MFE: Identifying Human Cytochrome P450 Inhibitors using Multi-task Learning and Molecular Fingerprint-embedded Encoding"

  Language:Python143

• biomed-AI/PROTAC-RL

  Language:Python5423

• Merck/DeepNeuralNet-QSAR

  Language:Python6526

• emreg00/toolbox

  Toolbox - generic utilities for data processing (e.g., parsing, proximity, guild scoring, etc...)

  Language:Python10859

• CompBtBs/Prediction_Flavoprotein_EM

  This repository contains the data and script used for the manuscript "Machine learning for efficient prediction of protein redox potential: the flavoproteins case" submitted to the Journal of Chemical Information and Modeling.

  Language:Jupyter Notebook32

• FFrankyy/FINDER

  FINDER - FInding key players in complex Networks through DEep Reinforcement learning (Nature Machine Intelligence)

  Language:Python17545

• mldlproject/2021-NPBERT-Antimalaria

  Source code and data of the paper entitled "Predicting Antimalarial Activity in Natural Products Using Pretrained Bidirectional Encoder Representations from Transformers"

  Language:Python22