sjackman/gfalint

Check a GFA file for syntax errors

gfalint: Check a GFA file for syntax errors

Graphical Fragment Assembly (GFA) is a genome sequence assembly graph file format.

See the Graphical Fragment Assembly (GFA) Format Specification.

Compile gfalint

./autogen.sh
./configure
make

Run gfalint

./gfalint examples/sample1.gfa
./gfalint examples/sample2.gfa