sjdlabgroup/SAHMI

Issues

• About the raw cell lines microbiome data ("cell.lines.txt" )

  #24 opened 2 months ago by 2023xiaolan
  0

• There was a complete mismatch between the barcodes of microbial counts and those of single cells

  #23 opened 3 months ago by lxzzzzzzzzzzzzzzzzzzzz
  0

• help with Wilcoxon testing?

  #22 opened 3 months ago by bitcometz
  0

• Is it normal that over 50% of the cells in my data contain microbiome?

  #21 opened 4 months ago by INeedCNS
  0

• A letter asking for help on SAHMI issues

  #13 opened a year ago by CongjiaMa
  4

• Detailed SAHMI codes

  #20 opened 5 months ago by duphiler
  0

• errors when run the taxa_counts.r function

  #12 opened a year ago by imMMQ
  5

• run extract_microbiome_reads.r and Error in split.default(taxid, ceiling(seq_along(taxid)/opt$ntaxid))

  #19 opened 8 months ago by sheyong111
  0

• One logical error: some species exist both in cell.line.txt and sample files but are not specified

  #18 opened 8 months ago by StackChan
  0

• "cell.lines.txt" or "Table S4" don't include some taxas

  #7 opened a year ago by ZhangMH2000
  1

• Read1/Reads2 using in Kraken2Uniq

  #6 opened 2 years ago by oyxf
  2

• Data using SAHMI

  #17 opened 9 months ago by Yanh35
  0

• No paired FASTA for Single-cell k-mer analysis

  #14 opened a year ago by ZhangDengwei
  3

• error about sckmer_unpaired.r

  #16 opened a year ago by leogg738
  0

• Bug

  #15 opened a year ago by WenyuLiang
  0

• One erro for the last step taxa_counts.r

  #8 opened a year ago by SkyStarStear
  1

• No sample.kraken.report.mpa.txt in the output path

  #11 opened a year ago by baike687
  0

• commond line format in using run_kraken.r

  #10 opened a year ago by baike687
  2

• what is--ncbi_blast_path

  #9 opened a year ago by baike687
  0

• Thanks for the wonderful algorithm

  #5 opened a year ago by Yunuuuu
  2

• Question: shall I regard the host's cDNA sequence as reference genome?

  #3 opened 2 years ago by AldrichCPU-bio
  1

• Does kraken step remove host reads?

  #2 opened 2 years ago by zyh4482
  2

• requirment of fastq input

  #1 opened 2 years ago by Sudolin
  1

• Different results in different computers

  #4 opened 2 years ago by Yunuuuu
  1