Pinned Repositories
bdmergeR
cNMF
Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data
d-chain
Global Bayesian drug response curve for systematic combinatorial drug synergy screen. Based on cell viability data.
emmapt
hpc-cibersort
Lightweight wrapper for running CIBERSORT via LSF.
lincs-direct-access-tools
Angular module that visualizes the tools and databases of the LINCS project.
lincs-milestones
Milestones table view for LINCS data found at http://amp.pharm.mssm.edu/milestones
lincs-particle-logo
Pixel-based real time animation of LINCS-DCIC logo.
pan-cancer-protein-bimodality
Source code for analyzing protein bimodal expression from collection of pan-cancer cell lines, identifying epithelial-mesenchymal states and transcriptomic signature.
starnet
Source code for cross-tissue co-expression analysis of the STARNET multitissue gene expression data from cardiovascular disease patients.
skoplev's Repositories
skoplev/pan-cancer-protein-bimodality
Source code for analyzing protein bimodal expression from collection of pan-cancer cell lines, identifying epithelial-mesenchymal states and transcriptomic signature.
skoplev/starnet
Source code for cross-tissue co-expression analysis of the STARNET multitissue gene expression data from cardiovascular disease patients.
skoplev/bdmergeR
skoplev/cNMF
Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data
skoplev/d-chain
Global Bayesian drug response curve for systematic combinatorial drug synergy screen. Based on cell viability data.
skoplev/emmapt
skoplev/hpc-cibersort
Lightweight wrapper for running CIBERSORT via LSF.
skoplev/lincs-direct-access-tools
Angular module that visualizes the tools and databases of the LINCS project.
skoplev/lincs-milestones
Milestones table view for LINCS data found at http://amp.pharm.mssm.edu/milestones
skoplev/lincs-particle-logo
Pixel-based real time animation of LINCS-DCIC logo.
skoplev/lincs-project-org
Web site for the LINCS project.
skoplev/p100mosaic
skoplev/rseq
A collection of programs for analyzing RNA-seq data.
skoplev/starnet-site
Back-end and front-end source code for STARNET website, hosted on starnet.mssm.edu
skoplev/tutor-heatmap
Tutorial for making heatmaps in R with the heatmap.3 package.