/hpc-cibersort

Lightweight wrapper for running CIBERSORT via LSF.

Primary LanguageR

hpc-cibersort

High performance computing functionality for running CIBERSORT.

Usage

  1. Request access to source code from cibersort.stanford.edu and place in lib/.

  2. Copy gene expression matrices in .tsv file format to input/.

  3. Configure options in runAll.sh and execute.