slimsuite
Bioinformatics, genomics and molecular evolution lab of Dr Richard Edwards, University of Western Australia.
UWAPerth, Australia
slimsuite's Stars
yechengxi/DBG2OLC
A genome assembler that reduces the computational time of human genome assembly from 400,000 CPU hours to 2,000 CPU hours, utilizing long erroneous 3GS sequencing reads and short accurate NGS sequencing reads.
cschin/peregrine-2021
slimsuite/chromsyn
Chromosome-level synteny plotting using orthologous regions
slimsuite/SLiMSuite
Open source short linear motif discovery and sequence analysis
sanger-tol/treeval
Pipelines for the production of Treeval data
slimsuite/buscomp
BUSCOMP: BUSCO Compiler and Comparison tool
slimsuite/diploidocus
Diploid genome assembly analysis tools
slimsuite/pafscaff
PAFScaff: Pairwise mApping Format reference-based scaffold anchoring and super-scaffolding.
slimsuite/depthsizer
Read-depth based genome size prediction
slimsuite/gapspanner
Genome assembly gap long read support and reassembly tool
slimsuite/numtfinder
NUMTFinder: Nuclear mitochondrial fragment (NUMT) search tool
slimsuite/saaga
SAAGA: Summarise, Annotate & Assess Genome Annotations
passeriforma/SLiMscape
Test repo for SLiMScape: a Cytoscape plugin for discovery and analysis of Short Linear Motifs
slimsuite/SLiMEnrich
SLiMEnrich Shiny App for prediction of domain-motif interactions
slimsuite/snapper
Genome-wide SNP Mapper and Genome Comparison Tool
slimsuite/synbad
Synteny-based scaffolding adjustment
slimsuite/taxolotl
Genome assembly taxonomy summary and assessment tool.
slimsuite/depthcharge
Genome assembly quality control and misassembly repair
slimsuite/depthkopy
Read-depth based copy number estimation