Pinned Repositories
needle
Needle (full name: Needle in a haystack) combines alignment and assembly for comprehensive virome, mycobiome, and eukaryome profiling on the strain level.
TAIR
The Atlas of Immunoglobulin Repertoires (TheAIR)
good.software
This is the GitHub repository for our recent study "A comprehensive analysis of the usability and archival stability of omics computational tools and resources." Please follow to the repository's wiki for more information and details on how this repository is connected to the paper.
HapIso
HapIso reconstructs the haploid transcriptome of a diploid organism from long single molecule reads
MiCoP
MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.
online.bioinformatics
recycle.RNA.seq
This project contains the links to the datasets, software and code that was used for our study "ROP: dumpster diving in RNA-sequencing to find the source of 1 trillion reads across diverse adult human tissues"
rop
The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating from repeat sequences, recombinant B and T cell receptors, and microbial communities.
UMI-Reducer
A computational tool for processing and differentiating PCR duplicates from biological duplicates
undergraduates-in-genomics
The catalogue was prepared for our study "Involving undergraduates in genomics research to narrow the education-research gap"
smangul1's Repositories
smangul1/rop
The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating from repeat sequences, recombinant B and T cell receptors, and microbial communities.
smangul1/online.bioinformatics
smangul1/good.software
This is the GitHub repository for our recent study "A comprehensive analysis of the usability and archival stability of omics computational tools and resources." Please follow to the repository's wiki for more information and details on how this repository is connected to the paper.
smangul1/MiCoP
MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.
smangul1/UMI-Reducer
A computational tool for processing and differentiating PCR duplicates from biological duplicates
smangul1/genomics.hoffman2
rna.seq.pipeline for hoffman2
smangul1/data_reusability
reusability
smangul1/error.correction.benchmarking
new EC
smangul1/read.aligment.review
read.aligment.review
smangul1/Microbe-scope
smangul1/UNIX_SUMPh_Moldova
UNIX command like with Colaboratory - Google
smangul1/djoin
DJoin
smangul1/immuneCNV
CNV of V genes
smangul1/Jacob.Ellison2
smangul1/robustness_read_alignment
Robustness of the read alignment algorithms
smangul1/seeing.beyond.target.results
results for running SBT on TCGA and OP datasets
smangul1/SLRG
systematic library of reference genomes
smangul1/building.microbial.genomics.resources
building.microbial.genomics.resources
smangul1/CMR
CMR
smangul1/genomicexpression.collaboration
smangul1/gganatogram
Create anatograms using ggplot2
smangul1/immune.specificity
scripts to compare kmers across phenotypes
smangul1/Jacob.Ellison
collaboration with Jacob Ellison
smangul1/MDD
new
smangul1/miscellaneous.scripts
miscellaneous
smangul1/my.presentations
my public presentations
smangul1/resources
smangul1/sbt
Seeing Beyond the Target (SBT) - computational protocol to process off target reads in WXS experiments
smangul1/sbt_tool
smangul1/test