smangul1/UMI-Reducer

Issues

• compare to other tools

  #21 opened 6 years ago by smangul1
  0

• bug

  #20 opened 6 years ago by smangul1
  0

• number per gene. Number of fields is in inCorrect

  #19 opened 6 years ago by smangul1
  0

• gene ids are not UNIQ in the final output

  #16 opened 7 years ago by smangul1
  1

• add UNIQ reads to number_of_reads_stat

  #18 opened 7 years ago by smangul1
  1

• add number of good reads with the length threshold - extractTag.py

  #17 opened 7 years ago by smangul1
  0

• running with toy example

  #13 opened 7 years ago by smangul1
  1

• MAPQ

  #12 opened 7 years ago by smangul1
  1

• pipeline more flexible to users

  #10 opened 7 years ago by smangul1
  3

• gene id

  #11 opened 7 years ago by smangul1
  1

• gprofile with multi mapped option

  #8 opened 7 years ago by svandriesche
  0

• multi-mapped reads category by gprofile. multi-mapped reads supposed to be removed

  #6 opened 7 years ago by svandriesche
  1

• remove the field in the stat file

  #7 opened 7 years ago by svandriesche
  1

• suggestion from Sarah

  #9 opened 7 years ago by smangul1
  1

• identical gene name (mostly ncRNAs) in the Gprofiler

  #2 opened 7 years ago by smangul1
  2

• Make sure that fasta file is saved in the dir specified as 2nd CMD argument extractTag.py

  #4 opened 7 years ago by smangul1
  1

• qsub log -> into sample dir

  #5 opened 7 years ago by smangul1
  1

• gprofile

  #3 opened 8 years ago by smangul1
  0

• multi mapped

  #1 opened 8 years ago by smangul1
  0