smirarab

smirarab's Stars

• circulosmeos/gdown.pl

  Google Drive direct download of big files

  Language:Perl9362019196

• smirarab/ASTRAL

  Accurate Species TRee ALgorithm

  Language:Java242207368

• chaoszhang/ASTER

  Accurate Species Tree EstimatoR: a family of optimation algorithms for species tree inference (including ASTRAL & CASTER)

  Language:C++9343210

• smirarab/sepp

  Ensemble of HMM methods (SEPP, TIPP, UPP)

  Language:Python87167238

• smirarab/pasta

  PASTA (Practical Alignment using SATe and Transitivity)

  Language:Python85135126

• shahab-sarmashghi/Skmer

  Fast and accurate tool for estimating genomic distances between genome-skims

  Language:Python393268

• esayyari/DiscoVista

  Language:Python3862813

• niemasd/FAVITES

  FAVITES (FrAmework for VIral Transmission and Evolution Simulation)

  Language:Python385444

• uym2/TreeShrink

  Implementation of the TreeShrink problem

  Language:Python3643611

• balabanmetin/apples

  distance based phylogenetic placement

  Language:Python244145

• uym2/MinVar-Rooting

  Linear-time rooting of phylogenetic trees

  Language:Python15325

• noraracht/CONSULT

  Accurate contamination removal using locality-sensitive hashing

  Language:C++143102

• chaoszhang/TAPER

  Two-dimensional outlier detection algorithm for pinpointing errors in small species-specific stretches of the multiple sequence alignments

  Language:Julia8571

• MihirBafna/FAVITESViz

  FrAmework for VIral Transmission and Evolution Simulation (FAVITES) output visualization webtool

  Language:JavaScript4391

• mirarablab/wiki

  4102

• uym2/MD-Cat

  MD-Cat: Molecular Dating using Categorical model

  Language:Python4230

• uym2/tripVote

  Completing gene trees without species trees in sub-quadratic time

  Language:C++4221

• esayyari/DISTIQUE

  Language:Python3300

• spond/HIVClustering

  Language:Python3322

• niemasd/Dual-Birth-Model

  Code and simulation data for "A two-state model of tree evolution and its applications to Alu retrotransposition"

  Language:Python2322

• smirarab/mirarablab

  2703

• uym2/LogDate

  Implementation of LogDate for Phylogenetic Dating

  Language:Python2240

• aguang/transmissim

  transmissim simulates genomic reads from epidemiological transmission networks

  Language:Python1380

• balabanmetin/sepp

  Language:Python1100

• dtneves/mrpmatrix

  builds a MRP (Matrix Representation with Parsimony) matrix on huge input files quickly

  Language:Java1100

• MGNute/ASTRAL_GUI

  lightweight GUI using wxPython that assembles a string to run ASTRAL from the command line.

  Language:Python1200

• yueyujiang/WoL_GG2_trees

  Language:Python1400