Pinned Repositories
1kp
Data and scripts used in the oneKP capstone analyses
ASTRAL
Accurate Species TRee ALgorithm
binning
Code for statistical binning and related scripts
DynaDup
Software to Estimate Species Tree by minimizing Duplication and Loss
FastSP
Software for comparing two (very large) alignments efficiently
mrpmatrix
builds a MRP (Matrix Representation with Parsimony) matrix on huge input files quickly
pasta
PASTA (Practical Alignment using SATe and Transitivity)
sepp
Ensemble of HMM methods (SEPP, TIPP, UPP)
sepp-refs
tutorials
smirarab's Repositories
smirarab/ASTRAL
Accurate Species TRee ALgorithm
smirarab/sepp
Ensemble of HMM methods (SEPP, TIPP, UPP)
smirarab/pasta
PASTA (Practical Alignment using SATe and Transitivity)
smirarab/1kp
Data and scripts used in the oneKP capstone analyses
smirarab/FastSP
Software for comparing two (very large) alignments efficiently
smirarab/sepp-refs
smirarab/DynaDup
Software to Estimate Species Tree by minimizing Duplication and Loss
smirarab/tutorials
smirarab/mirarablab
smirarab/skimming_scripts
scripts for preprocessing/analysis of genome skim data
smirarab/global
smirarab/chr4avian
smirarab/apples2-support-data
contains data used in apples-2 support papers
smirarab/ASTRAL-multi
smirarab/astralhistory
smirarab/astralmp-simulations
smirarab/binning-extra-data
Extra data provided for statistical binning project.
smirarab/bioconda-recipes
Conda recipes for the bioconda channel.
smirarab/DIMSIM-data
smirarab/ECE208-code-snippets
Code snippets from ECE208
smirarab/fastsp-data
smirarab/Fragments
smirarab/GEN_pipeline
Phylogenetic pipeline for the GEN paper
smirarab/GND_sim
smirarab/GORG-HGT
Analysis of HGT in the GORG dataset
smirarab/sate-tools-mac
smirarab/SODA
smirarab/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
smirarab/udance-data
Data for uDance paper
smirarab/website
my website's jekyll code