smoia/phys2cvr

Issues

• Implement signal dispersion

  #113 opened 7 months ago by smoia
  0

• Implement masking based on R2 or lags

  #112 opened 7 months ago by smoia
  0

• Implement CVR regressor refinement based on voxels showing largest CVR response (correlation with initial PetCO2 timecouse > threshold)

  #111 opened 7 months ago by CesarCaballeroGaudes
  0

• Implement manual x-corr slider

  #108 opened 7 months ago by smoia
  0

• Implement wavelet denoising

  #110 opened 7 months ago by smoia
  0

• Add option to remove voxels with large standard deviation (large vessels)

  #109 opened 7 months ago by CesarCaballeroGaudes
  0

• Manual shift for alignment of petco2 signal and ROI average timecourses

  #107 opened 7 months ago by CesarCaballeroGaudes
  0

• Implement optional mapping for second (absolute) peak in PetCO2 vs GM cross correlation

  #106 opened 7 months ago by smoia
  0

• Implement Loguru for better logging

  #95 opened 8 months ago by smoia
  0

• Add option to return additional timecourses, e.g. the PetCO2 fitted signal and the denoised signal

  #94 opened 8 months ago by CesarCaballeroGaudes
  2

• Denoise average ROI signal before computing cross-correlation with signal of interest

  #91 opened 10 months ago by smoia
  0

• Possible problem in bandpass filtering

  #89 opened a year ago by farnazdelavari
  1

• Finish implementing orthogonalisation methods

  #81 opened a year ago by smoia
  0

• Improve the modularization of the phys2cvr.py code

  #83 opened a year ago by CesarCaballeroGaudes
  0

• Implement statistical thresholding and find "smarter" ways than Sidak corrections

  #82 opened a year ago by smoia
  0

• Create figures using nilearn plotting

  #80 opened a year ago by smoia
  0

• Improve CLI help and docstrings

  #79 opened a year ago by smoia
  0

• Implement sentry

  #78 opened a year ago by smoia
  0

• Improve logging, boilerplate, citaitons, and duecredit

  #77 opened a year ago by smoia
  0

• Integrate phys2denoise belt-related models

  #76 opened a year ago by smoia
  0

• Add possiblity to flip regressor of interest (important for belts)

  #75 opened a year ago by smoia
  0

• Implement different response function convolutions, as well as skipping the step, for regressors of interest

  #74 opened a year ago by smoia
  0

• Change name related to current "convolution" step to the more precise PetCO2hrf modelling

  #73 opened a year ago by smoia
  0

• Refactor declaring forced types code

  #69 opened a year ago by smoia
  0

• Check optimal shift delta lags

  #68 opened a year ago by smoia
  0

• Check that imported denoising matrices have the right orientation

  #8 opened 3 years ago by smoia
  0

• Add documentation

  #5 opened 3 years ago by smoia
  0

• Add CI/CDs

  #6 opened 3 years ago by smoia
  0

• Add tests

  #4 opened 3 years ago by smoia
  0

• Implement multiple regressors _independendent_ lags

  #71 opened a year ago by smoia
  0

• Improve selection/exclusion of timepoints for Xcorr on the CLI

  #67 opened a year ago by smoia
  0

• Implement multiple regressor dependent lags

  #70 opened a year ago by smoia
  0

• Generate figure of cross correlation with "cleaned" average GM (using regressors)

  #66 opened a year ago by smoia
  0

• Add possibility to export AFNI/FSL compliant matrices

  #38 opened 2 years ago by smoia
  0

• Add filtering before GLM

  #12 opened 3 years ago by smoia
  0

• Implement a more flexible filter in phys2cvr.signal.filter_signal

  #9 opened 3 years ago by smoia
  0

• Implement other CVR computation methods

  #3 opened 3 years ago by smoia
  0

• Implement rapidtide wrap-around

  #2 opened 3 years ago by smoia
  0

• Add importer for AFNI GLM matrices

  #1 opened 3 years ago by smoia
  0

• Add a plot of two xcorrelations if both are run in phys2cvr.stats.get_regr

  #11 opened 2 years ago by smoia
  1

• Nifti not a 4D volume

  #51 opened 2 years ago by srithetree
  2

• Add parser options for specific methods or config file

  #7 opened 3 years ago by smoia
  0

• Group parser options into sections

  #13 opened 3 years ago by smoia
  0

• DOCSTRINGS

  #10 opened 3 years ago by smoia
  0