fmri

There are 535 repositories under fmri topic.

  • nilearn/nilearn

    Machine learning for NeuroImaging in Python

    Language:Python1.2k692.1k611

  • nipreps/fmriprep

    fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

    Language:HTML638311.8k294

  • gallantlab/pycortex

    Pycortex is a python-based toolkit for surface visualization of fMRI data

    Language:JavaScript60247305139

  • brainiak/brainiak

    Brain Imaging Analysis Kit

    Language:Python33834219137

  • translationalneuromodeling/tapas

    TAPAS - Translational Algorithms for Psychiatry-Advancing Science

    Language:MATLAB2192324590

  • cwatson/brainGraph

    Graph theory analysis of brain MRI data

    Language:R179183451
  • NeuroRA

    ZitongLu1996/NeuroRA

    A Python Toolbox for Multimode Neural Data Representation Analysis - A Representational Analysis Toolbox for Neuroscience, including Neural Pattern Similarity (NPS), Representational Similarity Analysis (RSA), Spatiotemporal Pattern Similarity (STPS) & Inter-Subject Correlation (ISC)

    Language:Python1726432
  • tedana

    ME-ICA/tedana

    TE-dependent analysis of multi-echo fMRI

    Language:Python1622056195

  • afni/afni

    Official AFNI source and documentation

    Language:C16119167105

  • canlab/CanlabCore

    Core tools required for running Canlab Matlab toolboxes. The heart of this toolbox is object-oriented tools that enable interactive analysis of neuroimaging data and simple scripts using high-level commands tailored to neuroimaging analysis.

    Language:MATLAB149515280

  • dPys/PyNets

    A Reproducible Workflow for Structural and Functional Connectome Ensemble Learning

    Language:Python12394441

  • cosanlab/nltools

    Python toolbox for analyzing imaging data

    Language:Python1221028943
  • dyconnmap

    makism/dyconnmap

    A dynamic connectome mapping module in python.

    Language:Python10291631

  • NeuroVault/NeuroVault

    Easy to use web database for statistical maps.

    Language:Python991636165

  • NSBLab/BrainEigenmodes

    Code supporting 'Geometric constraints on human brain function'

    Language:MATLAB899214

  • pelednoam/mmvt

    The Multi-Modality Visualization Tool (MMVT) is built for researchers who wish to have a better understanding of their neuroimaging anatomical and spatio-temporal data

    Language:Shell882018626
  • stagin

    egyptdj/stagin

    STAGIN: Spatio-Temporal Attention Graph Isomorphism Network

    Language:Python8621717

  • wiheto/teneto

    Temporal Network Tools

    Language:Python8655426

  • bioimagesuiteweb/bisweb

    This is the repository for the BioImage Suite Web Project

    Language:JavaScript80161932

  • spm/spm

    SPM (Statistical Parametric Mapping) - Development Version

    Language:MATLAB79122627

  • paulcbogdan/NiChord

    Package for visualizing brain networks. Creates chord diagrams drawn using matplotlib

    Language:Python77347

  • HALFpipe/HALFpipe

    ENIGMA HALFpipe is a user-friendly software that facilitates reproducible analysis of fMRI data

    Language:Python74417513

  • JuliaNeuroscience/NIfTI.jl

    Julia module for reading/writing NIfTI MRI files

    Language:Julia7463734

  • raamana/visualqc

    VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.

    Language:Python7376413

  • automaticanalysis/automaticanalysis

    Automatic Analysis (aa)

    Language:MATLAB721925235

  • trendscenter/gift

    Group ICA/IVA software (MATLAB)

    Language:MATLAB7291443
  • connectomemapper3

    connectomicslab/connectomemapper3

    Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, resting/state functional MRI, and recently EEG processing pipelines, from raw T1 / DWI / BOLD , and preprocessed EEG data to multi-resolution brain parcellation with corresponding connection matrices.

    Language:HTML71511429

  • deontaepharr/Diagnosing-ADHD-With-ConvLSTM

    Classifying ADHD fMRI data with a CNN+LSTM Model

    Language:Jupyter Notebook660017
  • network_TDA_tutorial

    multinetlab-amsterdam/network_TDA_tutorial

    This repository is dedicated for the tutorial on network and topological neuroscience.

    Language:HTML634423

  • miykael/fmriflows

    fmriflows is a consortium of many (dependent) fMRI analysis pipelines, including anatomical and functional pre-processing, univariate 1st and 2nd-level analysis, as well as multivariate pattern analysis.

    Language:MATLAB6272020

  • hans/nn-decoding

    Brain decoding/encoding with neural network language models

    Language:Jupyter Notebook548512

  • lukassnoek/NI-edu

    Student version of NI-edu courses

    Language:Jupyter Notebook521116

  • mschrimpf/neural-nlp

    [PNAS'21] The neural architecture of language: Integrative modeling converges on predictive processing

    Language:Jupyter Notebook517316

  • DCAN-Labs/abcd-hcp-pipeline

    bids application for processing functional MRI data, robust to scanner, acquisition and age variability.

    Language:Python5078219

  • rufinv/VAE-GAN-CelebA

    Code and notebooks related to the paper: "Reconstructing Faces from fMRI Patterns using Deep Generative Neural Networks" by VanRullen & Reddy, 2019

    Language:Python492625

  • tjiagoM/spatio-temporal-brain

    A Deep Graph Neural Network Architecture for Modelling Spatio-temporal Dynamics in rs-fMRI Data

    Language:Jupyter Notebook472188