DCAN-Labs/abcd-hcp-pipeline

Issues

• About the template used in ABCD

  #124 opened a month ago by Floralong
  0

• Fails without fieldmaps when DWI files are present

  #40 opened 2 months ago by audreymhoughton
  0

• Fails for anat only data when --ignore func flag isn't specified

  #43 opened 2 months ago by audreymhoughton
  3

• Remove redundant and unneeded code from helpers.py (and a few other minor updates)

  #68 opened 2 months ago by GregConan
  1

• Remove outdated intended run.py functionality

  #67 opened 2 months ago by GregConan
  1

• Minor fixes to clean up pipelines.py

  #69 opened 2 months ago by GregConan
  1

• Grab Readout Dir from a more intuitive JSON field

  #91 opened 2 months ago by audreymhoughton
  1

• Remove planned-but-never-implemented pipelines.py functionality

  #71 opened 2 months ago by GregConan
  1

• Add filemapper as pipeline stage to automatically generate derivates

  #92 opened 2 months ago by LuciMoore
  1

• Executive summary is not generated when running anat-only

  #122 opened 2 months ago by LuciMoore
  0

• KeyError: 'PixelBandwidth'

  #119 opened 2 months ago by JD-Hwang
  2

• Stuck at FreeSurfer Stage (mris_fix_topolo)

  #104 opened 2 months ago by fullcream9
  3

• abcd-hcp 1.3 and 1.4 do not produce all relevant folders and files for rsfc data

  #112 opened 2 months ago by johannesjuliusm
  2

• Support for FLAIR option as in original HCP

  #102 opened 2 months ago by nordicpioneer
  0

• BIDS Validation failing due to lru_cache

  #117 opened 6 months ago by pollaro
  1

• segmentation error

  #88 opened 7 months ago by juansanchezpena
  5

• ReadMe Updates

  #114 opened 7 months ago by audreymhoughton
  0

• Clarify run.py input arguments help messages

  #66 opened 7 months ago by GregConan
  2

• "Questions" points back to this same repo

  #115 opened 7 months ago by audreymhoughton
  0

• Request for task-residualized data

  #80 opened 10 months ago by mackenziemitchell
  5

• StudyTemplate fails at PostFreeSurfer

  #97 opened a year ago by jarodroland
  2

• Commit to Readthedocs, remove readme

  #98 opened a year ago by audreymhoughton
  0

• Exception: error caught during stage: DCANBOLDProcessing

  #76 opened a year ago by sunlianglong
  4

• Possible ants bracket expansion bug

  #96 opened a year ago by jarodroland
  0

• Respiration filter recommendations for TR greater than 1?

  #89 opened a year ago by iamdamion
  3

• t1 json - missing PixelBandwidth?

  #83 opened a year ago by sarahechang123
  2

• padding fix for bandpass filtering in DCAN BOLD of dcanumn/abcd-hcp-pipeline not working correctly

  #85 opened a year ago by xhaoNY
  1

• Clarification for filtered timeseries dtseries and mask data

  #84 opened a year ago by aporter1350
  4

• version 0.1.0 question

  #56 opened a year ago by juansanchezpena
  3

• Exception: error caught during stage: FMRIVolume

  #90 opened a year ago by fpichardo-umn
  1

• dataset_description.json

  #79 opened 2 years ago by jkkenley
  14

• Change respiration filter type with docker/singularity entry point?

  #63 opened 2 years ago by iamdamion
  2

• Refactor Dockerfile to be consistent w/ nhp-abcd-bids-pipeline, infant-abcd-bids-pipeline

  #50 opened 2 years ago by madisoth
  2

• Updates to README Additional Information (from review 2022-01-12)

  #61 opened 2 years ago by GregConan
  0

• Replace/Clarify Example in README (from review 2022-01-12)

  #60 opened 2 years ago by GregConan
  0

• Changes to README "Options" section (from review 2022-01-12)

  #59 opened 2 years ago by GregConan
  2

• Add to beginning of README (from review 2022-01-12)

  #58 opened 2 years ago by GregConan
  0

• nonlin masking error

  #78 opened 3 years ago by juansanchezpena
  1

• swarm/cloud v0.1.0

  #72 opened 3 years ago by juansanchezpena
  1

• [3165] - DCAN Labs ABCD-BIDS Community Collection (ABCC) File Availability

  #62 opened 3 years ago by fmriuser
  1

• Major pipelines.py bugs in Stage.remove_expected_outputs and PreFreeSurfer._get_intended_sefmaps

  #70 opened 3 years ago by GregConan
  0

• Query - enback eprime files

  #51 opened 3 years ago by richardbeare
  2

• Error in executive summary

  #52 opened 3 years ago by richardbeare
  7

• Analyses_v2 timecourses overwriting output csv (I believe)

  #55 opened 3 years ago by iamdamion
  2

• Exact Container Call and Version for ABCC BIDS Derivatives

  #46 opened 3 years ago by tjhendrickson
  4

• Recommendation for QC of distortion correction?

  #53 opened 3 years ago by dpagliaccio
  2

• DCAN BOLD Processing Derivatives for Seed-Based Analysis

  #41 opened 3 years ago by fmriuser
  6

• How should multiple sessions be handled?

  #47 opened 3 years ago by iamdamion
  7

• DCANBOLDProcessing Step Error (possibly file naming issue?)

  #48 opened 3 years ago by iamdamion
  6

• FreeSurfer version

  #45 opened 3 years ago by dpagliaccio
  1