fmri-preprocessing
There are 48 repositories under fmri-preprocessing topic.
nipreps/fmriprep
fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
andrewjahn/AndysBrainBook
This repository contains the files that generate Andy's Brain Book on ReadTheDocs.
DCAN-Labs/abcd-hcp-pipeline
bids application for processing functional MRI data, robust to scanner, acquisition and age variability.
karnigili/Computational-Neuroscience
Using computational tools to explore the networks underlying cognitive neuroscience
nmningmei/preprocessing_pipelines
Preprocessing Pipelines for EEG (MNE-python), fMRI (nipype), MEG (MNE-python/autoreject) data
sjburwell/fmriprep_denoising
Scripts for comparing different fmriprep denoising approaches on quality control functional connectivity (QC-FC) motion, QC-FC distance-dependence, and temporal degree of freedom loss.
phildean/SPM_fMRI_Example_Pipeline
Example pipeline for preprocessing, reading in behavioural files, first level and second level analysis
lab-lab/nndb
Analysis scripts and movie annotations for NNDb
elayden/MRIqual
A Matlab toolbox for examining the quality of structural (SNR) and functional (tSNR, SFNR) MRI
elliohow/fMRI_ROI_Analysis_Tool
An analysis tool that uses per-voxel statistical maps in conjunction with FSL atlases to create per-region statistical maps. Current usage includes the creation of regional maps of temporal signal to noise ratio.
biotechlibrary/AutismBrainSVM
This code repository contains a collection of Python scripts for classifying autistic and control conditions using Support Vector Machines (SVM), leveraging preprocessed functional MRI (fMRI) data from the ABIDE dataset.
GT-EmoryMINDlab/rodent-whole-brain-preprocessing-recipe
A generally applicable whole-brain preprocessing toolbox for mice and rats
alexlaurence/CLARA
🐀🧠Using Convolutional Neural Networks to Predict fMRI Noise in Rats
harsharaman/bold5000_fmri
Implementation of LSTM and CNN models for classification of visual stimuli from fMRI data on BOLD5000 dataset
dcdace/fMRI-COGNESTIC-23
Materials for the "fMRI analysis" workshop at the Cognitive Neuroscience Skills Training In Cambridge-2023 (COGNESTIC-2023).
LabNeuroCogDevel/fmri_processing_scripts
legacy signal processing leveraging afni, ants, fsl, nipy, robex, and wavelet toolbox - brnfswdktm
brain-modelling-group/fmripop
A collection of python scripts and functions to (po)st(p)rocess fmridata, preprocessed with fmriprep
htwangtw/pyretroicor
Python implementation of RETROICOR - physiology regressors for fMRI preprocessing.
Remi-Gau/AVT_analysis
Code to analyze audio-visual-tactile high-resolution 7T data
abdullahbas/SPM_AUTO
Command line automation of SPM
aramis-lab/clinica_pipeline_fmri_preprocessing
fMRI-Preprocessing pipeline used for [Guillon et al., 2019]
asamallab/Curvature-FCN-ASD
This repository is associated with the manuscript: “Graph Ricci Curvatures Reveal Atypical Functional Connectivity in Autism Spectrum Disorder”
chris-langfield/fslfeatsetup
Python library for setting up FEAT analyses (FSL)
maryjis/preprocessing_fmri_dti
This repo is provided pipeline for preprocessing fmri & dti data to functional and structural connectivity matrices
nipreps/fmripost-phase
An attempt at an fMRIPost workflow for handling phase data
Robin970822/mouse-mri
preprocessing and statistical analysis for mouse MRI.
yunfeiluo/fMRI_DTI_processing_pipelines
fMRI data processing pipelines
ausdfrost/round_robin_person_decoding
predictive machine learning classification and data processing on neuroscience brain image data
gauravsangwan/f-MRI_Symphony
This GitHub repository contains code and data for a assignment investigating the brain's auditory networks using functional Magnetic Resonance Imaging (fMRI).
jessedesimone/fmri_proc
shell script package for (pre)processing fmri data
P-VS/AutoSPM12_processing
Automated processing of single echo (SE), multi-echo (ME) fMRI, ASLBOLD and VBM in SPM12.
sepehr-mortaheb/fMRI_preproc_SPM
This repository suggests an organized pipeline for spatial preprocessing of fMRI data (both task-based and resting-state).
Utrosa/Thesis_scripts
Scripts used in the "Dynamic Functional Connectivity in Autism Spectrum Disorder" project.
yousef-seyfari/Computational-Neuroscience
This repository contains some codes for the computational neuroscience.
JeffTheNinja57/research_workshop
Comparing latent space representations using autoencoders and vision transformers using fMRI data.