/pyretroicor

Python implementation of RETROICOR - physiology regressors for fMRI preprocessing.

Primary LanguagePythonBSD 3-Clause "New" or "Revised" LicenseBSD-3-Clause

The project is nolonger maintained!

Updates

Python implementation of RETROICOR (Glover et al., 2000) - physiology regressors for fMRI preprocessing.

Dependencies

The required dependencies to use the software are:

  • Python >= 3.5
  • NumPy >= 1.18
  • Nibabel >= 2.5

Install

First make sure you have installed all the dependencies listed above. Then you can install pyretroicor by running the following command in a command prompt:

pip install -U --user pyretroicor

Reference

Glover, G. H., Li, T. Q., & Ress, D. (2000). Image‐based method for retrospective correction of physiological motion effects in fMRI: RETROICOR. Magnetic Resonance in Medicine: An Official Journal of the International Society for Magnetic Resonance in Medicine, 44(1), 162-167.

MATLAB implementation from: https://github.com/mkassinopoulos/PRF_estimation

Support

Please use GitHub issues for questions, bug reports or feature requests.

License

This project is licensed under BSD-3-Clause.