audreymhoughton

Pinned Repositories

• nda-abcd-collection-3165

  This is the documentation repository for ongoing releases to the NDA collection 3165. Please add GitHub Issues here for requests or feedback.

  1612623

• abcd-dicom2bids

  For selectively downloading ABCD data QC'ed as good by the DAIC, converting it to BIDS standard input data, selecting the best pair of spin echo field maps, and correcting the sidecar JSON files to meet BIDS Validator spec.

  Language:Python19144920

• abcd-hcp-pipeline

  bids application for processing functional MRI data, robust to scanner, acquisition and age variability.

  Language:Python5078119

• BIBSnet

  This BIDS App provides the utility of creating a nnU-Net anatomical MRI segmentation and mask with a infant brain trained model. It can easily be included in other processing pipelines and for circumventing JLF within Nibabies.

  Language:Python410728

• CABINET

  CABINET is a utility that standardizes subsequent container execution. Emphasizing reproducibility, users can share JSONs to exactly replicate how containerized processes follow each other.

  Language:Python1081

• cdni-brain

  readthedocs for CDNI collaborators and members

  39922

• file-mapper

  An easy tool to copy/move/symlink files from one directory to the other!

  Language:Python712134

• MSI-utilities

  Language:Python00

• nda-abcd-s3-downloader

  Tool for downloading ABCD_BIDS inputs and derivatives from the ABCD-BIDS NDA Collection 3165.

  Language:Python2416021

• SLURM_wrappers

  Language:Shell1740

audreymhoughton's Repositories