Pinned Repositories
nda-abcd-collection-3165
This is the documentation repository for ongoing releases to the NDA collection 3165. Please add GitHub Issues here for requests or feedback.
techchallenge
This Python script processes an XML file containing people's data, validates and cleans the data, categorizes individuals as "Adult" or "Child" based on age, generates a summary report, and optionally outputs a bar graph of the average age by city.
abcd-dicom2bids
For selectively downloading ABCD data QC'ed as good by the DAIC, converting it to BIDS standard input data, selecting the best pair of spin echo field maps, and correcting the sidecar JSON files to meet BIDS Validator spec.
abcd-hcp-pipeline
bids application for processing functional MRI data, robust to scanner, acquisition and age variability.
BIBSnet
This BIDS App provides the utility of creating a nnU-Net anatomical MRI segmentation and mask with a infant brain trained model. It can easily be included in other processing pipelines and for circumventing JLF within Nibabies.
CABINET
CABINET is a utility that standardizes subsequent container execution. Emphasizing reproducibility, users can share JSONs to exactly replicate how containerized processes follow each other.
cdni-brain
readthedocs for CDNI collaborators and members
MSI-utilities
nda-abcd-s3-downloader
Tool for downloading ABCD_BIDS inputs and derivatives from the ABCD-BIDS NDA Collection 3165.
SLURM_wrappers
audreymhoughton's Repositories
audreymhoughton/techchallenge
This Python script processes an XML file containing people's data, validates and cleans the data, categorizes individuals as "Adult" or "Child" based on age, generates a summary report, and optionally outputs a bar graph of the average age by city.