DCAN-Labs/abcd-dicom2bids

Issues

• abcd-dicom2bids fails with scans in tabular release

  #58 opened 2 months ago by gsudre
  3

• Removing RawStorage

  #42 opened 2 months ago by mriedel56
  1

• Siemens DWI bvec bvals

  #75 opened 4 months ago by audreymhoughton
  0

• Remove MatLab eta-squared function and replace with Python

  #56 opened 7 months ago by audreymhoughton
  1

• DWI grads for Philips version 5.6.1

  #57 opened 7 months ago by gsudre
  1

• Remove FSL and replace with nibabel

  #55 opened 7 months ago by audreymhoughton
  1

• Improve JSON handling

  #37 opened 7 months ago by GregConan
  1

• Streamline unpack_and_setup function in abcd2bids.py

  #35 opened 7 months ago by GregConan
  1

• In abcd2bids.py, combine the unpack_and_setup function with the correct_jsons function

  #36 opened 7 months ago by GregConan
  1

• Add more logging

  #38 opened 7 months ago by GregConan
  2

• Remove redundancies from argparse parameter definitions in abcd2bids.py

  #31 opened 7 months ago by GregConan
  1

• Replace homebrewed functions with already-existing Python libraries

  #30 opened 7 months ago by GregConan
  1

• Refactor unpack_and_setup.sh in Python

  #29 opened 7 months ago by GregConan
  3

• Update --subject-list argparse flag

  #32 opened 7 months ago by GregConan
  1

• ERROR setting up DWI: (Philips and GE) software version not recognized

  #71 opened 7 months ago by ericearl
  4

• Download summarize instead of full download

  #6 opened 7 months ago by ericearl
  1

• Import Python scripts instead of running them via the terminal

  #28 opened 7 months ago by GregConan
  1

• Dockerize the repository

  #27 opened 7 months ago by GregConan
  2

• Only operates on text EventRelatedInformation

  #43 opened 8 months ago by mriedel56
  2

• Update abcd_dcm2bids.conf JSON file for Dcm2Bids v3.1.1

  #82 opened 9 months ago by ericearl
  0

• Adjust dcm2bids config for new Philips scanner version

  #59 opened 9 months ago by audreymhoughton
  1

• run_order_fix.py is hard-coded to ses-baselineYear1Arm1

  #80 opened 9 months ago by ericearl
  0

• dcm2bids error number of volumes

  #47 opened a year ago by perronea
  1

• Update SciPy Version in `src/requirements.txt`

  #67 opened a year ago by MIZwally
  1

• BIDS validator failing after conversion

  #44 opened a year ago by ericearl
  2

• Version of dcmtk

  #68 opened a year ago by MIZwally
  1

• Dicom2bids issue after Siemens upgrade - no pairing

  #62 opened a year ago by ebeanato
  3

• Clarify Directions for Usage

  #66 opened a year ago by MIZwally
  1

• Running abcd2bids.py ends with a FileNotFoundError, however it doesnt affect the overall outputs

  #50 opened a year ago by lundq163
  6

• dcm2bids is incorrectly labeling some SEFMs from GE scanners

  #46 opened a year ago by perronea
  2

• Add and delete temp data for each subject instead of for all at once

  #2 opened 3 years ago by GregConan
  1

• download_nda_data and unpack_and_setup steps support different subject list standards

  #26 opened 3 years ago by ericearl
  4

• Rename create_good_and_bad_series_table to be more descriptive and less cumbersome

  #39 opened 3 years ago by GregConan
  1

• Missing Siemens bvals and bvecs

  #24 opened 3 years ago by Shotgunosine
  4

• Data with "Replaced" rows in abcd_fastqc01 no longer works as expected

  #40 opened 3 years ago by ericearl
  11

• delete this one

  #33 opened 3 years ago by GregConan
  0

• Doesn't seem to be copying bids tree to output directory.

  #23 opened 4 years ago by Shotgunosine
  3

• No effective echo spacing for Philips task-fmri scans

  #21 opened 4 years ago by carlosivanr
  4

• MID sequences won't download

  #20 opened 4 years ago by hasgrig
  2

• Run order fixing fails

  #11 opened 4 years ago by mangstad
  5

• No requirements file

  #19 opened 4 years ago by hasgrig
  1

• Undocumented dependency on jq

  #17 opened 4 years ago by carlosivanr
  3

• stop before and start at arguments are not fully documented in README.md

  #16 opened 4 years ago by ericearl
  1

• Subject List Argument

  #14 opened 4 years ago by tientong98
  2

• Needs "stop_before" argument

  #13 opened 4 years ago by ericearl
  1

• abcd_fastqc01.txt doesn't read in correctly as-is

  #12 opened 5 years ago by ericearl
  3

• Question about run_eta_squared.sh

  #7 opened 5 years ago by tientong98
  1

• example DAL_ABCD_merged_pcqcinfo.csv?

  #4 opened 5 years ago by DVSneuro
  3

• Add "start at step" feature

  #1 opened 5 years ago by GregConan
  0