ericearl
Neuroinformaticist acting as a Data Scientist in the NIMH Data Science & Sharing Team
NIMH Data Science & Sharing TeamPortland, Oregon
Pinned Repositories
nda-abcd-collection-3165
This is the documentation repository for ongoing releases to the NDA collection 3165. Please add GitHub Issues here for requests or feedback.
abcd-dicom2bids
For selectively downloading ABCD data QC'ed as good by the DAIC, converting it to BIDS standard input data, selecting the best pair of spin echo field maps, and correcting the sidecar JSON files to meet BIDS Validator spec.
abcd-hcp-pipeline
bids application for processing functional MRI data, robust to scanner, acquisition and age variability.
.github
Interesting things to be said about augmented OpenNeuro datasets
202404-seattle-maintainer-meeting
bids-branding
A repository meant to store everything there is to know about BIDS branding things. This project has been started by Tolulope Oladele.
bids-phenotype
A utility repository for BIDS phenotypic data conversion, aggregation, and segregation.
hcp2nipype-hack2015
The outcomes of the HCP to Nipype project at the OHBM Hackathon 2015.
MakeRPG
MakeRPG is intended to be a system that allows anyone who can edit plain text YAML files to make automatic characters from game systems.
dataset-phenotypes
Preparatory scripts for BIDS tabular phenotypic data in large neuroimaging datasets.
ericearl's Repositories
ericearl/MakeRPG
MakeRPG is intended to be a system that allows anyone who can edit plain text YAML files to make automatic characters from game systems.
ericearl/bids-branding
A repository meant to store everything there is to know about BIDS branding things. This project has been started by Tolulope Oladele.
ericearl/.github
Interesting things to be said about augmented OpenNeuro datasets
ericearl/202404-seattle-maintainer-meeting
ericearl/abcd-dicom2bids
For selectively downloading ABCD data QC'ed as good by the DAIC, converting it to BIDS standard input data, selecting the best pair of spin echo field maps, and correcting the sidecar JSON files to meet BIDS Validator spec.
ericearl/Auto-GPT
An experimental open-source attempt to make GPT-4 fully autonomous.
ericearl/bids-phenotype
A utility repository for BIDS phenotypic data conversion, aggregation, and segregation.
ericearl/abcd-fasttrack2bids
Fork of MIZwally's fork for a quick PR.
ericearl/automatic-quality-control
About Implementation of "An efficient semi-supervised quality control system trained using physics-based MRI-artefact generators and adversarial training"
ericearl/bids-curation-checklist
A checklisting attempt to make the DCN's CURATED steps for data curation apply to BIDS.
ericearl/bids-extensions
BIDS Extension Proposal Docs
ericearl/bids-specification
Brain Imaging Data Structure (BIDS) Specification
ericearl/bids-website
Website for the Brain Imaging Data Structure standard. NEW WEBSITE PREVIEW: https://bids-website.readthedocs.io/en/latest/
ericearl/ericearl
Config files for my GitHub profile.
ericearl/ericearl.github.io
Live GitHub Page at:
ericearl/fancy_github
A repository to teach about some of GitHub's suite of repository-specific tools such as: Issues, Milestones, Projects, Wiki, and Discussion.
ericearl/github-slideshow
A robot powered training repository :robot:
ericearl/list_diff
A simple python printing tool for taking the differences of text lists.
ericearl/minimal-mistakes
:triangular_ruler: Jekyll theme for building a personal site, blog, project documentation, or portfolio.
ericearl/mm-github-pages-starter
mm-github-pages-starter
ericearl/nda-abcd-s3-downloader
Tool for downloading ABCD_BIDS inputs and derivatives from the ABCD-BIDS NDA Collection 3165.
ericearl/nda-abcd-tabulate
A repository to house making BIDS TSV and JSON files out of ABCD Releases.
ericearl/nda-tools
Python package for interacting with NDA web services. Used to validate, submit, and download data to and from NDA.
ericearl/nonbirthing-faq
A repository for creating a nice website FAQ design for non-birthing people taking care of children.
ericearl/observable-figure
Working toward a chord diagram figure on Observable.
ericearl/ohbm2023_schedule
ericearl/reviewing-a-pull-request
ericearl/Sea
A file system in user space to provide data locality and in memory computing without application instrumentation
ericearl/visualqc
VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.
ericearl/WTFmindjammer
An HTML / CSS / JavaScript template for creating WhatTheFuckIsMyMashup.com style web sites