ME-ICA/tedana

Issues

• ICA on spatially or temporally concatenated multi-echo data

  #1133 opened 2 months ago by tsalo
  6

• Overhaul branch protection rules

  #1118 opened a month ago by tsalo
  2

• Moving the RobustICA defaults to a different file

  #1132 opened a month ago by eurunuela
  4

• September 2024 Developers' call

  #1130 opened a month ago by handwerkerd
  0

• Adding a conservative elbow-free decision tree

  #1129 opened 2 months ago by handwerkerd
  2

• No August 2024 Developers Call

  #1119 opened 2 months ago by handwerkerd
  0

• Support ICA on complex-valued data

  #1056 opened 2 months ago by tsalo
  1

• Minimum image regression relies on distinction between "accepted" and "ignored" components

  #1085 opened 3 months ago by tsalo
  1

• Add option to classify components based on their correlation with regressors

  #1009 opened 3 months ago by eurunuela
  0

• July 2024 Developers' call (shifted to July 24th)

  #1110 opened 3 months ago by handwerkerd
  6

• suggested tedana conda environmentl yml

  #1111 opened 3 months ago by rcwelsh
  5

• wrong T2* maps

  #1107 opened 4 months ago by qiuge726
  1

• Repeated nilearn warning message for report

  #1092 opened 4 months ago by handwerkerd
  1

• Consistently use either Legendre polynomials or scaled monomials for detrending

  #1099 opened 5 months ago by tsalo
  5

• June 2024 Developers Call

  #1102 opened 5 months ago by handwerkerd
  2

• Display of IC components has a grey outline in report

  #1095 opened 6 months ago by dc307
  13

• Using tedana in conjunction with rapidtide

  #1071 opened 7 months ago by tsalo
  6

• Support complex-valued decomposition on analytic signal to account for lagged signals

  #1022 opened 9 months ago by tsalo
  0

• May 2024 Developers call

  #1096 opened 6 months ago by handwerkerd
  0

• `reshape_niimg()` may be too flexible

  #1070 opened 7 months ago by tsalo
  1

• Proposal to release version 24.0.1

  #1093 opened 6 months ago by handwerkerd
  2

• Censoring data within tedana

  #1053 opened 8 months ago by handwerkerd
  7

• Nonlinear Curve fitting is slow, and other anatomical T2star fitting issues

  #1091 opened 6 months ago by dowdlelt
  1

• Add global signal (if `--gscontrol gsr` is used) to component plots

  #1087 opened 7 months ago by tsalo
  2

• Improve dropout adaptive mask method in cases where multiple bad echoes occur early on

  #1083 opened 7 months ago by tsalo
  2

• April 2024 Developers call

  #1081 opened 7 months ago by handwerkerd
  0

• Elegantly handle missing images in HTML report

  #1084 opened 7 months ago by tsalo
  1

• Add adaptive mask figure to the HTML report

  #1072 opened 7 months ago by tsalo
  0

• Adaptive mask is generated using whole acquisition matrix, instead of brain mask

  #1059 opened 7 months ago by tsalo
  1

• Detrending & tedana (or detrended variance explained)

  #1054 opened 8 months ago by handwerkerd
  9

• dynamics reports crashing with bokeh 3.4.0

  #1063 opened 7 months ago by handwerkerd
  2

• March 2024 Developers call

  #1062 opened 7 months ago by handwerkerd
  0

• Draft March 2024 newsletter

  #1067 opened 7 months ago by handwerkerd
  0

• killed

  #1058 opened 8 months ago by bedardp2
  0

• mapca error

  #1019 opened 9 months ago by rhl508
  6

• Decompose, and classify components from, FIT-T2* and FIT-S0

  #1023 opened 9 months ago by tsalo
  10

• Limit selection node functions to minimal inputs

  #1052 opened 8 months ago by tsalo
  1

• Enforce equal figure width in HTML report

  #1050 opened 8 months ago by tsalo
  1

• Improve multi-echo acquisition recommendations

  #1049 opened 8 months ago by tsalo
  5

• Rename ComponentSelector to DecisionTree

  #1051 opened 8 months ago by tsalo
  1

• Check orientation of brain/acquisition in figures

  #1042 opened 8 months ago by tsalo
  0

• RobustICA behaviour on non-convergence

  #1047 opened 8 months ago by Lestropie
  3

• What modifications can be done to optimally combine ASL signal instead of BOLD ?

  #1046 opened 9 months ago by sboylan
  6

• Add a check on volumes and TE input order

  #1041 opened 9 months ago by tsalo
  0

• Refactor `ComponentSelector` to match sklearn's `DecisionTreeClassifier`

  #1034 opened 9 months ago by tsalo
  0

• Support YAMLs for config files

  #1030 opened 9 months ago by tsalo
  4

• February 2024 Developers call

  #1027 opened 9 months ago by handwerkerd
  0

• Switch to pinning maximum versions in pyproject.toml

  #1028 opened 9 months ago by tsalo
  0

• TinyLetter shutting down

  #1011 opened 9 months ago by handwerkerd
  5

• January 2024 Developers call

  #1015 opened 10 months ago by handwerkerd
  0