"Could not import module 'numpy'"

Question

"Could not import module 'numpy'"

smurdock-UVic opened this issue 2 years ago · 3 comments

Hi there,

Just trying out MicrobeCensus but I cannot get it to work. For both the test and run_microbe_census.py I get:
Could not import module 'numpy'

I did the install using setup.py and have updated my numpy but I still get this error. Thoughts?

-Sheryl

Answer 1 · 2022-09-19T13:37:24.000Z

same problem here - is there no solution for this?

Answer 2 · 2022-09-19T13:51:15.000Z

Not sure what's wrong, but my guess is that your PYTHONPATH needs to be updated. I just installed and ran using conda which worked fine. Can you try using conda or pip?

Answer 3 · 2022-09-19T15:57:24.000Z

YES, it is working! The bioconda install solved the problem! Thanks for your quick response.