snayfach/MicrobeCensus

Issues

• This code is definitely out of date.

  #34 opened 3 months ago by Dr-Doomhammer
  0

• TypeError: cannot unpack non-iterable NoneType object in run_microbe_census.py

  #32 opened 9 months ago by shanexuuu
  4

• does genome equivalents mean bacteria cell numbers

  #33 opened 9 months ago by diego00012138
  1

• Something wrong when put 'python setup.py install'

  #30 opened 2 years ago by Rooobben
  1

• "Could not import module 'numpy'"

  #29 opened 2 years ago by smurdock-UVic
  3

• differences with other normalization methods

  #31 opened 2 years ago by sapuizait
  2

• TypeError: 'NoneType' object is not iterable

  #28 opened 5 years ago by cookiemonsterxxm
  5

• MicrobeCensus is not using all the reads when set to a large number

  #27 opened 5 years ago by jolespin
  3

• question: calculation of RPKG

  #26 opened 5 years ago by jzrapp
  1

• making sense of results...

  #25 opened 5 years ago by jzrapp
  3

• problem reading multiple files

  #22 opened 5 years ago by slhogle
  9

• could not convert string to float: FIRM56_P641593085

  #18 opened 5 years ago by chengdai
  4

• How the performance would be for metatranscriptomes?

  #24 opened 6 years ago by SilentGene
  2

• Gene Sequences in Fasta

  #23 opened 6 years ago by dcdanko
  2

• Python2 dependency in conda

  #20 opened 6 years ago by nigiord
  1

• Test failed

  #19 opened 7 years ago by slschnorr
  3

• Installation on a cluster redux

  #17 opened 7 years ago by sturne29
  6

• Pip install error from official 1.1.0 tarball

  #15 opened 7 years ago by boulund
  4

• training.py: Unused test set?

  #14 opened 8 years ago by psaxcode
  3

• MicrobeCensus crashes, "ValueError: Sequence and quality captions differ."

  #4 opened 9 years ago by taltman
  17

• Doc request: TMPDIR

  #13 opened 8 years ago by taltman
  1

• installation on a cluster

  #12 opened 9 years ago by Thomieh73
  2

• temp files when program exits of error

  #11 opened 9 years ago by jenmobberley
  1

• MicrobeCensus should use requested # of cores

  #9 opened 9 years ago by taltman
  1

• You're living in the past, man

  #6 opened 9 years ago by taltman
  1

• run_microbe_census.py crashes when input file not found

  #8 opened 9 years ago by taltman
  1

• Feature Request: Add support for DIAMOND

  #5 opened 9 years ago by taltman
  1

• MC should use the Unix exit code convention

  #10 opened 9 years ago by taltman
  1

• Feature Request: command line parameter to control subsampling

  #7 opened 10 years ago by taltman
  1

• Could not import module 'pkg_resources'

  #3 opened 10 years ago by tallnutt
  2

• Handling errors with command line parameters

  #1 opened 10 years ago by LBragg
  1