snayfach/MicrobeCensus

Something wrong when put 'python setup.py install'

Rooobben opened this issue · 1 comments

/envs/ham/lib/python3.7/site-packages/setuptools/command/install.py: 37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other s tandards-based tools.
setuptools.SetuptoolsDeprecationWarning,
/envs/ham/lib/python3.7/site-packages/setuptools/command/easy_instal l.py:147: EasyInstallDeprecationWarning: easy_install command is deprecated. Use build and pip and other standards-based tools.
EasyInstallDeprecationWarning,
/envs/ham/lib/python3.7/site-packages/pkg_resources/init.py:125: PkgResourcesDeprecationWarning: 4.0.0-unsupported is an invalid version and will not be suppor ted in a future release
PkgResourcesDeprecationWarning,
running bdist_egg
running egg_info
creating MicrobeCensus.egg-info
writing MicrobeCensus.egg-info/PKG-INFO
writing dependency_links to MicrobeCensus.egg-info/dependency_links.txt
writing requirements to MicrobeCensus.egg-info/requires.txt
writing top-level names to MicrobeCensus.egg-info/top_level.txt
writing manifest file 'MicrobeCensus.egg-info/SOURCES.txt'
reading manifest file 'MicrobeCensus.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'training/README.txt'
adding license file 'LICENSE.txt'
writing manifest file 'MicrobeCensus.egg-info/SOURCES.txt'
installing library code to build/bdist.linux-x86_64/egg
running install_lib
running build_py
creating build
creating build/lib
creating build/lib/microbe_census
copying microbe_census/microbe_census.py -> build/lib/microbe_census
copying microbe_census/init.py -> build/lib/microbe_census
creating build/lib/tests
copying tests/test_microbe_census.py -> build/lib/tests
copying tests/init.py -> build/lib/tests
creating build/lib/microbe_census/data
copying microbe_census/data/pars.map -> build/lib/microbe_census/data
copying microbe_census/data/rapdb_2.15 -> build/lib/microbe_census/data
copying microbe_census/data/read_len.map -> build/lib/microbe_census/data
copying microbe_census/data/gene_fam.map -> build/lib/microbe_census/data
copying microbe_census/data/coefficients.map -> build/lib/microbe_census/data
copying microbe_census/data/rapdb_2.15.info -> build/lib/microbe_census/data
copying microbe_census/data/gene_len.map -> build/lib/microbe_census/data
copying microbe_census/data/weights.map -> build/lib/microbe_census/data
creating build/lib/microbe_census/bin
copying microbe_census/bin/rapsearch_Darwin_2.15 -> build/lib/microbe_census/bin
copying microbe_census/bin/rapsearch_Linux_2.15 -> build/lib/microbe_census/bin
copying microbe_census/bin/prerapsearch_Darwin_2.15 -> build/lib/microbe_census/bin
copying microbe_census/bin/prerapsearch_Linux_2.15 -> build/lib/microbe_census/bin
creating build/lib/microbe_census/example
copying microbe_census/example/example.fa.gz -> build/lib/microbe_census/example
copying microbe_census/example/example.fq.gz -> build/lib/microbe_census/example
creating build/lib/tests/data
copying tests/data/metagenome.fa.gz -> build/lib/tests/data
copying tests/data/community.txt -> build/lib/tests/data
creating build/bdist.linux-x86_64
creating build/bdist.linux-x86_64/egg
creating build/bdist.linux-x86_64/egg/microbe_census
creating build/bdist.linux-x86_64/egg/microbe_census/data
copying build/lib/microbe_census/data/pars.map -> build/bdist.linux-x86_64/egg/microbe_census/d ata
copying build/lib/microbe_census/data/rapdb_2.15 -> build/bdist.linux-x86_64/egg/microbe_census /data
copying build/lib/microbe_census/data/read_len.map -> build/bdist.linux-x86_64/egg/microbe_cens us/data
copying build/lib/microbe_census/data/gene_fam.map -> build/bdist.linux-x86_64/egg/microbe_cens us/data
copying build/lib/microbe_census/data/coefficients.map -> build/bdist.linux-x86_64/egg/microbe_ census/data
copying build/lib/microbe_census/data/rapdb_2.15.info -> build/bdist.linux-x86_64/egg/microbe_c ensus/data
copying build/lib/microbe_census/data/gene_len.map -> build/bdist.linux-x86_64/egg/microbe_cens us/data
copying build/lib/microbe_census/data/weights.map -> build/bdist.linux-x86_64/egg/microbe_censu s/data
creating build/bdist.linux-x86_64/egg/microbe_census/example
copying build/lib/microbe_census/example/example.fa.gz -> build/bdist.linux-x86_64/egg/microbe_ census/example
copying build/lib/microbe_census/example/example.fq.gz -> build/bdist.linux-x86_64/egg/microbe_ census/example
copying build/lib/microbe_census/microbe_census.py -> build/bdist.linux-x86_64/egg/microbe_cens us
creating build/bdist.linux-x86_64/egg/microbe_census/bin
copying build/lib/microbe_census/bin/rapsearch_Darwin_2.15 -> build/bdist.linux-x86_64/egg/micr obe_census/bin
copying build/lib/microbe_census/bin/rapsearch_Linux_2.15 -> build/bdist.linux-x86_64/egg/micro be_census/bin
copying build/lib/microbe_census/bin/prerapsearch_Darwin_2.15 -> build/bdist.linux-x86_64/egg/m icrobe_census/bin
copying build/lib/microbe_census/bin/prerapsearch_Linux_2.15 -> build/bdist.linux-x86_64/egg/mi crobe_census/bin
copying build/lib/microbe_census/init.py -> build/bdist.linux-x86_64/egg/microbe_census
creating build/bdist.linux-x86_64/egg/tests
creating build/bdist.linux-x86_64/egg/tests/data
copying build/lib/tests/data/metagenome.fa.gz -> build/bdist.linux-x86_64/egg/tests/data
copying build/lib/tests/data/community.txt -> build/bdist.linux-x86_64/egg/tests/data
copying build/lib/tests/test_microbe_census.py -> build/bdist.linux-x86_64/egg/tests
copying build/lib/tests/init.py -> build/bdist.linux-x86_64/egg/tests
byte-compiling build/bdist.linux-x86_64/egg/microbe_census/microbe_census.py to microbe_census. cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/microbe_census/init.py to init.cpython-37.p yc
byte-compiling build/bdist.linux-x86_64/egg/tests/test_microbe_census.py to test_microbe_census .cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/tests/init.py to init.cpython-37.pyc
changing mode of build/bdist.linux-x86_64/egg/microbe_census/bin/rapsearch_Darwin_2.15 to 1141
changing mode of build/bdist.linux-x86_64/egg/microbe_census/bin/rapsearch_Linux_2.15 to 1141
changing mode of build/bdist.linux-x86_64/egg/microbe_census/bin/prerapsearch_Darwin_2.15 to 10 41
changing mode of build/bdist.linux-x86_64/egg/microbe_census/bin/prerapsearch_Linux_2.15 to 114 1
creating build/bdist.linux-x86_64/egg/EGG-INFO
installing scripts to build/bdist.linux-x86_64/egg/EGG-INFO/scripts
running install_scripts
running build_scripts
creating build/scripts-3.7
copying and adjusting scripts/run_microbe_census.py -> build/scripts-3.7
changing mode of build/scripts-3.7/run_microbe_census.py from 664 to 775
creating build/bdist.linux-x86_64/egg/EGG-INFO/scripts
copying build/scripts-3.7/run_microbe_census.py -> build/bdist.linux-x86_64/egg/EGG-INFO/script s
changing mode of build/bdist.linux-x86_64/egg/EGG-INFO/scripts/run_microbe_census.py to 775
copying MicrobeCensus.egg-info/PKG-INFO -> build/bdist.linux-x86_64/egg/EGG-INFO
copying MicrobeCensus.egg-info/SOURCES.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying MicrobeCensus.egg-info/dependency_links.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying MicrobeCensus.egg-info/requires.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying MicrobeCensus.egg-info/top_level.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
zip_safe flag not set; analyzing archive contents...
microbe_census.pycache.microbe_census.cpython-37: module references file
tests.pycache.test_microbe_census.cpython-37: module references file
creating dist
creating 'dist/MicrobeCensus-1.1.0-py3.7.egg' and adding 'build/bdist.linux-x86_64/egg' to it
error: [Errno 13] Permission denied: 'build/bdist.linux-x86_64/egg/microbe_census/bin/prerapsea rch_Darwin_2.15'

Then I used "MicrobeCensus/build/scripts-3.7/run_microbe_census.py", it prompted me "ModuleNotFoundError: No module named 'microbe_cencus'"

P.S. I can't sudo

I also encountered the same problem, please have any good solution, thank you very much