Pinned Repositories
akt
Ancestry and Kinship Tools
AnnoProbe
anuja
edge-detection
exome_analysis
A pipeline for analysis of exome seq from raw fastq to annotated variants
GSEA_Analysis
quadrantplots
snijesh's Repositories
snijesh/BinReg
Binary Regression Models
snijesh/face_swap
End-to-end, automatic face swapping pipeline
snijesh/gene_lists
List of gene lists for genomic analyses.
snijesh/icgc_rnaseq_align
snijesh/ImageEnhancer
Image Enhancer to reduce noises, color image, or expand resolutions
snijesh/kmerGenerator
Generate all possible k-mers
snijesh/MapspliceRSEM-clean-doc
snijesh/mergelanes
Merge fastq files split over lanes
snijesh/miRCancerdb
A database for microRNA-gene/protein expression correlation in cancer.
snijesh/NGS-pipe
NGS-pipe: next-generation sequencing pipelines for precision oncology
snijesh/obo_parser
Parses ontologies in .obo format (such as the Human Phenotype Ontology) and converts them to a .tsv table.
snijesh/Patient2Vec
Patient2Vec: A Personalized Interpretable Deep Representation of the Longitudinal Electronic Health Record
snijesh/pdx_exomeseq
Pipeline analysis for whole exome sequencing of pancreatic cancer PDX models
snijesh/pRRophetic
R package
snijesh/r-tutorial
This book covers the essentials of using R
snijesh/RNAseq-workflow
A repository for setting up a RNAseq workflow
snijesh/RNAseqDB
snijesh/RNASeqPipeline
snijesh/smallseq
Pipeline to analyze small RNAs from single-cells
snijesh/snakefiles
:snake: Snakefiles for common RNA-seq data analysis workflows.
snijesh/tnbc_scrnaseq
snijesh/TopoICSim
TopoICSim: A new semantic similarity measure based on gene ontology
snijesh/VBT-TrioAnalysis