Pinned Repositories
akt
Ancestry and Kinship Tools
AnnoProbe
edge-detection
exome_analysis
A pipeline for analysis of exome seq from raw fastq to annotated variants
GSEA_Analysis
quadrantplots
snijesh.github.io
snijesh's Repositories
snijesh/akt
Ancestry and Kinship Tools
snijesh/anuja
snijesh/Autism-Spectrum
Autism Spectrum Disorder
snijesh/basicfiltering
Basic filtering scripts for various mutation calling tools
snijesh/bioinfokit
Bioinformatics data analysis and visualization toolkit
snijesh/Cancer_notes
A continually expanding collection of cancer genomics notes and data
snijesh/Comparison-study-of-germline-CNV-calling-tools
snijesh/Correlation
Correlation Using Python & R
snijesh/data
datasets used for analysis
snijesh/datahub
A centralized location for storing curated data ready for inclusion in cBioPortal.
snijesh/datarium
Data Bank for Statistical Analysis and Visualization
snijesh/Diabetes
snijesh/endometrial-paper
repo containing code for the paper "Identification of a novel subgroup of endometrial cancer patients with loss of thyroid hormone receptor expression and improved survival"
snijesh/enrichment4GTEx_clusterProfiler
reproduce the functional enrichment analysis presented in GTEx paper using clusterProfiler/DOSE
snijesh/ExternalWorks
snijesh/Face-Swap
Face swapping, Image morphing, Image warping.
snijesh/GR
snijesh/Immuno_notes
Immunology-related bioinformatics data and tools
snijesh/imogene
snijesh/MicroArrayPipeline
MAAPster is a comprehensive tool to perform transcriptome analysis of human or mouse Affymetrix gene expression data
snijesh/Pipeliner
An open-source and scalable solution to NGS analysis powered by the NIH's Biowulf cluster.
snijesh/rstatix
Pipe-friendly Framework for Basic Statistical Tests in R
snijesh/Savitha
snijesh/scRNA-seq_notes
A list of scRNA-seq analysis tools
snijesh/SJRI
St. John's Research Institute
snijesh/supervenn
supervenn: precise and easy-to-read multiple sets visualization in Python
snijesh/TCGAbarcode
snijesh/TCGAsurvival
Scripts to analyze TCGA data
snijesh/TPMCalculator
TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files
snijesh/wrangle
data_wrangling