snikumbh
Prerviously: Post-Doc@MRC LMS; MPI-INF PhD. Other profile at MPI-GitHub: https://github.molgen.mpg.de/snikumbh
London
Pinned Repositories
acronym
ACRONYM (Acronym CReatiON for You and Me)
archR
archR: Identifying promoter sequence architectures de novo using NMF
awesome-deepbio
A curated list of awesome deep learning applications in the field of computational biology
CAGEr
Mirror of Bioconductor's CAGEr package repository
nimfa
Nimfa: Nonnegative matrix factorization in Python
practice-problems-bioinformatics
Beginner level practice problems for aspiring bioinformaticians
seqArchR
seqArchR: Identifying (promoter) sequence architectures de novo using NMF
seqArchRplus
Downstream analysis plots for (promoter) sequence (architecture) clusters
snikumbh.github.io
toy-seq-generation
Generate toy sequences
snikumbh's Repositories
snikumbh/nimfa
Nimfa: Nonnegative matrix factorization in Python
snikumbh/practice-problems-bioinformatics
Beginner level practice problems for aspiring bioinformaticians
snikumbh/seqArchR
seqArchR: Identifying (promoter) sequence architectures de novo using NMF
snikumbh/acronym
ACRONYM (Acronym CReatiON for You and Me)
snikumbh/archR
archR: Identifying promoter sequence architectures de novo using NMF
snikumbh/awesome-deepbio
A curated list of awesome deep learning applications in the field of computational biology
snikumbh/book
snikumbh/CAGEr
Mirror of Bioconductor's CAGEr package repository
snikumbh/ccc_track_hub
snikumbh/deep-review
A collaboratively written review paper on deep learning, genomics, and precision medicine
snikumbh/seqArchRplus
Downstream analysis plots for (promoter) sequence (architecture) clusters
snikumbh/snikumbh.github.io
snikumbh/toy-seq-generation
Generate toy sequences
snikumbh/ggseqlogo
Publication-quality sequence logos in R
snikumbh/HiCPlotter
“When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau
snikumbh/higlass
Fast contact matrix visualization for the web.
snikumbh/juicer
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
snikumbh/lripr
lripr
snikumbh/pybbi
Cython wrapper to UCSC BigWig and BigBed library
snikumbh/remake
Make-like declarative workflows in R
snikumbh/reproducible-seqArchR-manuscript
Supporting files for seqArchR manuscript
snikumbh/tadtool
TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.