Pinned Repositories
ClusToR
A clustering tool for reference assisted whole genome de novo assembly
darknet
Convolutional Neural Networks
FASTK
A fast K-mer counter for high-fidelity shotgun datasets
gzstream
gzstream
holy-build-box
System for building cross-distribution Linux binaries
htslib_howto
Collection of simple C scripts for parsing vcf or bam files using the htslib C library. These scripts can be used as the starting point for more complex scripts
IVP
Iterative Vecscreen Pipeline
lastz_analysis
A tool for analyzing lastz alignment result generated using "--format=general" option to find structural variations or to perform super-scaffolding guided by reference genome
manta
Structural variant and indel caller for mapped sequencing data
ntCard
Estimating k-mer coverage histogram of genomics data
sohnjangil's Repositories
sohnjangil/lastz_analysis
A tool for analyzing lastz alignment result generated using "--format=general" option to find structural variations or to perform super-scaffolding guided by reference genome
sohnjangil/ClusToR
A clustering tool for reference assisted whole genome de novo assembly
sohnjangil/darknet
Convolutional Neural Networks
sohnjangil/FASTK
A fast K-mer counter for high-fidelity shotgun datasets
sohnjangil/gzstream
gzstream
sohnjangil/holy-build-box
System for building cross-distribution Linux binaries
sohnjangil/htslib_howto
Collection of simple C scripts for parsing vcf or bam files using the htslib C library. These scripts can be used as the starting point for more complex scripts
sohnjangil/IVP
Iterative Vecscreen Pipeline
sohnjangil/manta
Structural variant and indel caller for mapped sequencing data
sohnjangil/ntCard
Estimating k-mer coverage histogram of genomics data
sohnjangil/picual
A fast, c-based pickling library with some helpful features for pickling and multiprocessing
sohnjangil/simple_set
Simple Set implementation in C
sohnjangil/sohnjangil
Config files for my GitHub profile.
sohnjangil/svaba
Structural variation and indel detection by local assembly
sohnjangil/xgboost
Scalable, Portable and Distributed Gradient Boosting (GBDT, GBRT or GBM) Library, for Python, R, Java, Scala, C++ and more. Runs on single machine, Hadoop, Spark, Dask, Flink and DataFlow