soichih
A software engineer @ brainlife.io. Making supercomputers more accessible for researchers and scientists.
brainlife.io @ Indiana UniversityBloomington, Indiana
Pinned Repositories
app-conn-preprocessing
fMRI preprocessing via CONN
app-hcp-postfreesurfer
BIDS app for HCP post-FreeSurfer for BrainLife. Outputs include surface topologies and features resampled onto the high (164k) dimensional atlas space as well as myelin mappings. (Please see https://github.com/Washington-University/HCPpipelines/wiki/v3.4.0-Release-Notes,-Installation,-and-Usage#structural-preprocessing for more information on HCP structural pipelines.)
autohpss
Auto HPSS
docker-node-koop
Dockerfile for node koop
jquery-perfsonar-matrix
jQuery plugin to display perfsonar datastore matrix
jquery-stickypage
jQuery plugin to display a page with chronological sticky tags.
jquery-tileviewer
jQuery TileViewer plugin
node-dicom-faker
Generate random dicom header for testing purposes
node-htcondor
nodejs hook for htcondor CLI
node-sgeo
Spherical geometry library for node
soichih's Repositories
soichih/node-sgeo
Spherical geometry library for node
soichih/ohbm2021
Scripts related to working with OHBM 2021 program content
soichih/passport-iucas
Indiana University CAS module for express passport.
soichih/app-anat-stats
Sample app to generate some random stats from anatomy
soichih/app-convert-tractmeasures-2-tractprofile
soichih/app-mp2rage-denoiseUNI
Removes noise in an MP2RAGE_UNI.nii.gz image given a user-provided regularization parameter (see app-mp2rage-selectregparam).
soichih/app-QWarp
runs AFNI's 3dQwarp function over a NIfTI file
soichih/app-slicer-fsl
soichih/app-test
updated 3
soichih/app-trk2mp4
Generate animation of trk streamlines
soichih/bl-ERGM
Source code for ERGM app in BrainLife.io
soichih/datalad
Keep scientific data under control with git and git-annex
soichih/datalad-paper-joss
Repository for JOSS paper on DataLad
soichih/doks
Hugo theme helping you build modern documentation websites.
soichih/dsla
CTIL Content Management / Knowledge Objects / Computer Science
soichih/elkhart-dashboard
soichih/ga-test
ipython notebook for brainlife group analysis
soichih/HD-BET_app
HD-BET is an automated brain extraction method for MRI using neural networks.
soichih/hugo-sustain
🦁 Personal blog theme built with Bootstrap, powered by Hugo.
soichih/influxdb
Scalable datastore for metrics, events, and real-time analytics
soichih/kwyk_neuronet
soichih/notif
soichih/OCT_scripts
Documented matlab code for processing Voxeleron OCT data and MAIA data
soichih/plab.hugo
soichih/singularity
Singularity: Application containers for Linux
soichih/sparkle
Sparkle Online Event Platform
soichih/ssh2-multiplexer
SSH2 exec channel queuer/multiplexer/backpressure
soichih/tcp-port-used
A simple Node.js module to check if a TCP port is already bound.
soichih/terracotta
Terracotta (a portmanteau of Tool for Education Research with RAndomized COnTrolled TriAls) is a plug-in to the learning management system that allows the contents of online assignments to be differentiated for experimental treatment variations, and to be assigned randomly to different groups of students. Terracotta also enables privacy protections for student participants, such as informed consent that is hidden from the teacher, filtering of non-consenting participants from result summaries and data exports, and removal of student identifiers from these exports. Terracotta's goal is to lower the technical and methodological barriers to conducting more rigorous and responsible education research.
soichih/warehouse
Service that allows data warehousing and workfow orchestration