Ontology featurization should support OMOP only
EthanSteinberg opened this issue · 0 comments
EthanSteinberg commented
Right now FEMR supports ontology expansion in both tabular and neural network featurization (https://github.com/som-shahlab/femr/blob/main/src/femr/featurizers/featurizers.py#L178 for tabular featurization and "hierarchical" for neural network featurization).
It would be useful to enforce additional variants here in some fashion.
In particular, we want to enforce a strict vocabulary here (OMOP only ideally).