som-shahlab/femr

Issues

• Training CLMBR - AssertionError: Can only have one batch when collating

  #227 opened 4 months ago by EricBorland
  0

• Add a flowsheet fixer feature to FEMR

  #205 opened 4 months ago by EthanSteinberg
  0

• Better documentation for how to construct `ontology.pkl` in Tutorial 1: Ontology Support

  #207 opened 4 months ago by scottfleming
  0

• Show how to use non-boolean label types in Tutorial 2: Labelers

  #208 opened 4 months ago by scottfleming
  0

• Time conversion backward compatibility

  #211 opened 4 months ago by ZepengHuo
  1

• fEMR website is blank

  #223 opened 4 months ago by angiemarie
  2

• possible device issue with `transformer.compute_features`

  #184 opened 8 months ago by duncanmcelfresh
  2

• Documentation for installing xformers on macOS

  #217 opened 8 months ago by scottfleming
  1

• Give reasonable recommendations or at least consistent defaults for CLMBR vocabulary size

  #215 opened 8 months ago by scottfleming
  2

• Suggest in README that users create a new environment

  #216 opened 8 months ago by scottfleming
  1

• Better Dataset type enforcement and error messages for `aggregate_over_dataset` esp regarding `new_fingerprint` kwarg

  #214 opened 8 months ago by scottfleming
  0

• bug in MOTOR loss

  #213 opened 8 months ago by duncanmcelfresh
  2

• Ontology featurization should support OMOP only

  #212 opened 8 months ago by EthanSteinberg
  0

• femr 0.2.0 event_stream_data_standard missing

  #187 opened 9 months ago by kgweber-um
  3

• HF Model Load broken

  #191 opened 9 months ago by kgweber-um
  4

• Import of femr.datasets broken

  #190 opened 9 months ago by jordanhilsman
  3

• Tutorial on how to write a custom Featurizer

  #137 opened 9 months ago by Miking98
  0

• Count featurization on pre-existing splits

  #172 opened 9 months ago by scottfleming
  1

• birth code mismatch

  #178 opened 9 months ago by ZepengHuo
  0

• Synthetic data generation for OMOP isn't quite right.

  #182 opened 9 months ago by EthanSteinberg
  0

• define dataset schema required by femr

  #177 opened 9 months ago by duncanmcelfresh
  0

• Documentation typo

  #169 opened 9 months ago by scottfleming
  0

• Better documentation for where to find current extracts.

  #95 opened 9 months ago by EthanSteinberg
  1

• Need a functionality to compute predictions directly off a femr model

  #146 opened 9 months ago by EthanSteinberg
  0

• bug in femr.featurizers.core.preprocess_featurizers

  #185 opened 10 months ago by duncanmcelfresh
  3

• possible issue with dill & abstract base classes

  #183 opened 10 months ago by duncanmcelfresh
  8

• intermittent issue with `LabeledPatientTask.add_event` when calling `femr.models.transformer.compute_features`

  #176 opened a year ago by duncanmcelfresh
  1

• How can I apply the motor model?

  #175 opened a year ago by clzhang123
  1

• Running piton extract flowsheet tool directly on BigQuery download fails

  #96 opened a year ago by Miking98
  0

• Better error handling for PatientDatabase constructor

  #105 opened a year ago by scottfleming
  1

• Have a way to create a Batch without needing to create a PatientDatabase

  #131 opened a year ago by ericpan64
  2

• FEMR does not appear to be working on M1/M2 chips

  #152 opened a year ago by EthanSteinberg
  0

• Nigam-A100 vs. V100 node to use MOTOR

  #166 opened a year ago by ZepengHuo
  0

• Improve error handling for non-list labels in `LabeledPatients`

  #170 opened a year ago by scottfleming
  0

• Add get_all_children to ontology

  #120 opened a year ago by EthanSteinberg
  0

• Allow `clmbr_compute_representations` to run on CPU

  #157 opened a year ago by guolin1
  1

• GPU-enabled FEMR installations won't work on Mac

  #162 opened a year ago by Miking98
  1

• A more robust way of identifying mortality

  #154 opened a year ago by guolin1
  3

• make femr_visit_detail_concept_id optional

  #149 opened a year ago by guolin1
  4

• Develop example femr refactor prototype

  #133 opened 2 years ago by EthanSteinberg
  4

• Tutorial on how to write a custom Labeler

  #136 opened 2 years ago by Miking98
  0

• Add more flexible `filter` kwarg to `CountFeaturizer`

  #106 opened 2 years ago by Miking98
  1

• Add femr.__version__

  #128 opened 2 years ago by jason-fries
  1

• Look into wheel building process library

  #126 opened 2 years ago by ericpan64
  0

• cpu_jax_extension needs better error reporting

  #100 opened 2 years ago by EthanSteinberg
  0

• `clmbr_create_batches` transformer_vocab_size requirement

  #124 opened 2 years ago by guolin1
  1

• extractors.omop.OMOP_BIRTH is misspecified

  #119 opened 2 years ago by guolin1
  2

• Allow delimiter specification in ETLs

  #117 opened 2 years ago by guolin1
  0

• clmbr_compute_representations create multiple patient representations for the same index time

  #101 opened 2 years ago by guolin1
  3

• Runtime error "Event writer with zero rows?" should just be a warning

  #98 opened 2 years ago by Miking98
  0