somet3000
Hi! I'm Karthik. I'm currently a PhD student at Cornell University studying computational biology.
Cornell University
somet3000's Stars
Teichlab/scg_lib_structs
Collections of library structure and sequence of popular single cell genomic methods
IGVF-CRISPR/CRISPR-JAMBOREE
2nd IGVF CRISPR-JAMBOREE
caleblareau/BuenColors
R package of colors for the Buenrostro Lab
snehamitra/SCARlink
broadinstitute/Drop-seq
Java tools for analyzing Drop-seq data
grimbough/rhdf5
Package providing an interface between HDF5 and R
calico/borzoi
RNA-seq prediction with deep convolutional neural networks.
lh3/bwa
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
broadinstitute/picard
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
kharchenkolab/numbat
Haplotype-aware CNV analysis from single-cell RNA-seq
pritykinlab/guidescan-cli
A gRNA database generation tool.
mckennalab/FlashFry
FlashFry: The rapid CRISPR target site characterization tool
immunogenomics/harmony
Fast, sensitive and accurate integration of single-cell data with Harmony
tansey-lab/pyro_tutorial
MangiolaLaboratory/sccomp
Testing differences in cell type proportions from single-cell data.
immunogenomics/SCENT
Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA
snakemake/snakemake
This is the development home of the workflow management system Snakemake. For general information, see
alexdobin/STAR
RNA-seq aligner
statgen/locuszoom-standalone
Create regional association plots from GWAS or meta-analysis
fhormoz/caviar
schatzlab/t2t-variants
mcvickerlab/GLiMMIRS
GLiMMIRS: Generalized Linear Models for Measuring Interactions between Regulatory Sequences
ENCODE-DCC/atac-seq-pipeline
ENCODE ATAC-seq pipeline
adityatelange/hugo-PaperMod
A fast, clean, responsive Hugo theme.
rstudio/blogdown
Create Blogs and Websites with R Markdown
lmcinnes/umap
Uniform Manifold Approximation and Projection
datavzrd/datavzrd
A tool to create visual HTML reports from collections of CSV/TSV tables
Xinglab/rmats-turbo
a2iEditing/RNAEditingIndexer
A tool for the calculation of RNA-editing index for RNA seq data