Pinned Repositories
alphafold
Open source code for AlphaFold.
AnchorWave
sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation
Asgard
scRNA-drug-main
awesome-public-datasets
A topic-centric list of HQ open datasets.
B10KGenome_annotation
Scripts used in the annotation of B10K genomes
Basset
Convolutional neural network analysis for predicting DNA sequence activity.
bx-python
Tools for manipulating biological data, particularly multiple sequence alignments
cactus
Official home of genome aligner based upon notion of Cactus graphs
Cactus_Alignments_Tools
The toolbox used to deal with cactus whole genome alignments
CMB-PLAINS
song984888's Repositories
song984888/IRIS
A Shiny web server for interactive visualization and analysis of RNA-seq data
song984888/Survival-Prediction-During-Heart-Failures
Two-year survival prediction of patients in acute heart failures
song984888/lncLOOM
lncLOOM is a graph-based framework that uses integer programming to identify combinations of short motifs that are deeply conserved in rapidly evolving sequences. It is implemented in Python 2 and is supported on Linux/Unix-based systems. A version that is compatible with Python3 will be released shortly.
song984888/PhyLTR
Phylogenetic Analysis of Long Terminal Repeat Retrotransposons
song984888/galaxy-rna-workbench
Galaxy RNA workbench
song984888/SingleR
SingleR: Single-cell RNA-seq cell types Recognition (legacy version)
song984888/Zoonomia-200mammal-alignment-using-cactus-
Code related to 200 Mammals Project
song984888/B10KGenome_annotation
Scripts used in the annotation of B10K genomes
song984888/Basset
Convolutional neural network analysis for predicting DNA sequence activity.
song984888/pyMSA
Scoring multiple sequence alignments with Python
song984888/CNEr
Conserved Noncoding Elements (CNEs) Identification and Visualisation
song984888/SynergySeq
song984888/kurtosis_conservation
Scripts for calculating kurtosis based conservation
song984888/CNEs-DDDNonCoding2017
Code for paper published in March, 2017 analysing the role of de novo mutations in severe developmental disorders (part of the deciphering developmental disorders project).
song984888/tad_cnes_harmston2017
song984888/OnPLS
OnPLS: Orthogonal Projections to Latent Structures in Multiblock and Path Model Data Analysis
song984888/CNE-dddMAPS
Mutability adjusted proportion of singletons calculation using synonymous SNPs from the DDD unaffected parents.
song984888/etc
/etc/ on my Thinkpad t430