songlab-cal/tape
Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.
PythonBSD-3-Clause
Issues
- 2
- 5
Training UniRep language model error
#33 opened by faruuk - 7
Mapping to Pfam IDs
#75 opened by christophfeinauer - 3
secondary structure dictionary
#61 opened by jcdelpiano - 1
Extend list of models by SeqVec
#59 opened by ptynecki - 2
tape-embed fails under PyTorch 1.5.0
#48 opened by wbogud - 1
Add Bepler's model
#37 opened by DaHaiHuha - 8
About LSTM pretrained model
#19 opened by xnuohz - 1
UniRep's representation
#53 opened by SorteKanin - 3
Fine-Tuning of Bert model
#57 opened by simolanzi - 2
- 4
UniRep or BERT fine tuning examples?
#71 opened by KirkDCO - 3
Loss and Perplexity
#74 opened by AmeenAli - 1
- 3
- 1
- 1
- 1
Visualization
#66 opened by simolanzi - 2
Examples for using code (not from command line?)
#65 opened by ddofer - 2
Reading output_filename.npz
#62 opened by simolanzi - 1
Loss and perplexity
#72 opened by AmeenAli - 1
UniRep pretrained weights
#73 opened by fteufel - 2
- 1
- 1
Data licenses
#56 opened by tdiethe - 1
Corrupted raw remote homology dataset
#58 opened by wbogud - 5
CUDA oom with batch size 1
#55 opened by jxmorris12 - 1
Question about onehot contact prediction model
#52 opened by jessevig - 1
what does the from tape import data_utils refer?
#54 opened by HadXu - 4
tape-eval error
#42 opened by brendanyap - 6
Corrupted stability dataset (raw format)
#49 opened by ikedim01 - 1
Questions: About train BERT from scratch parameter?
#46 opened by HadXu - 2
Can I make some simple predictions directly (just like stability on my own datasets) using the sequence embedding results?
#44 opened by goes0n - 3
Unable to locate data_utils module
#47 opened by jessevig - 2
trRosetta problem with tape_embed
#45 opened by serbulent - 4
decode fluorescence sequences
#35 opened by RensDimmendaal - 1
Reverse sequence for LSTM model
#38 opened by ayushkarnawat - 2
- 3
Language modeling targets
#32 opened by Kyonio - 9
evaluation
#24 opened by Kevin-chen-sheng - 1
- 2
batch sizes
#31 opened by dlnp2 - 3
Assertion Error in Tape-Embed
#30 opened by sabyUWO - 1
How to train models on new data (FASTA)
#27 opened by faruuk - 2
Embed not finishing for large files
#29 opened by sabyUWO - 12
tape-embed error
#16 opened by Kevin-chen-sheng - 2
About python command
#20 opened by binarywz - 5
tape-train error
#18 opened by binarywz - 13
bert-base embeddings
#13 opened by KarinBrisker - 5