spencer-hs
Data Program Manager Bioinformatics M.S. Former NIEHS Research Fellow AWS Certified Developer
Pinned Repositories
certified-aws-developer-associate-notes
My notes in preparation for the 2019 AWS developer associate exam
CompetingRisks
Competing Risks Scripts in R for Probability of Transplant Events
Data-Science-Projects
Fasta-into-Blast-Bp-File-Pipeline-Python
Calculating the metrics for an input fasta file, formatting an assembly fasta file for blast, blast input gene fasta file to assembly blastdb, parse blast output file into .bp file, parse .bp file to identify hits, extract those hits from assembly fasta file and output them in output file .
Gene-Expression-Networks-3-Brain-Region-R
Construction of Gene Expression Network across 3 brain regions in the presence of Ethanol using WGCNA in R
Helper-Snippets
Useful code snippets discovered in various languages that will likely come in handy again
MonteCarloSimulations
NCBO_BIOPORTAL_EXTRACTOR_MONGOBUILDER
Python program that extracts the desired data from specified NCBO BioPortal ontologies and creates a MongoDB database to store them in
RNA_Sequencing
TransplantCollectionsViews
SQL
spencer-hs's Repositories
spencer-hs/CompetingRisks
Competing Risks Scripts in R for Probability of Transplant Events
spencer-hs/Gene-Expression-Networks-3-Brain-Region-R
Construction of Gene Expression Network across 3 brain regions in the presence of Ethanol using WGCNA in R
spencer-hs/Helper-Snippets
Useful code snippets discovered in various languages that will likely come in handy again
spencer-hs/certified-aws-developer-associate-notes
My notes in preparation for the 2019 AWS developer associate exam
spencer-hs/Data-Science-Projects
spencer-hs/Fasta-into-Blast-Bp-File-Pipeline-Python
Calculating the metrics for an input fasta file, formatting an assembly fasta file for blast, blast input gene fasta file to assembly blastdb, parse blast output file into .bp file, parse .bp file to identify hits, extract those hits from assembly fasta file and output them in output file .
spencer-hs/MonteCarloSimulations
spencer-hs/NCBO_BIOPORTAL_EXTRACTOR_MONGOBUILDER
Python program that extracts the desired data from specified NCBO BioPortal ontologies and creates a MongoDB database to store them in
spencer-hs/RNA_Sequencing
spencer-hs/TransplantCollectionsViews
SQL
spencer-hs/fasta_combiner
spencer-hs/FormsAnalysis
spencer-hs/java_binary_tree_creation-search
A java script to create a binary tree and search through the tree.
spencer-hs/java_merge_sort-binary_search
A java script conducting a binary search that is first sorted using a binary search
spencer-hs/java_sequential-binary_search
A comparison on the run time between a sequential and binary search
spencer-hs/magprime
A plugin for RAMS which has magfest event-specific information in it
spencer-hs/miRquant
spencer-hs/ncbo_rest_sample_code
Sample code that demonstrates the use of the NCBO REST services
spencer-hs/PanInteractome
Scripts used to help facilitate the construction of a binary protein interaction network
spencer-hs/Sequence-Parsing-Counting-Python
Small programs to parse and analyze sequence files. Misc programs
spencer-hs/Survival
spencer-hs/Viral_miRNA_Alignment
Trimming and alignment pipeline for created for cutadapt and bowtie