Scripts used to help facilitate the construction of a binary protein interaction network
Fasta Combiner: Takes all .faa files in a directory and creates a new file with the same extension with a separtion line between each file's contents.
Runner: Calls the subprocess command to act upon all the fasta files in a directory to process the command to run EggNOG's downloadable annotation program.
EggNOG_scraper: A work in progress program that attempts to submit individual proteins into the query field of http://eggnogdb.embl.de/ and scrape the COG identifier associated with the individual protein.
CITATION: eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences. Jaime Huerta-Cepas, Damian Szklarczyk, Kristoffer Forslund, Helen Cook, Davide Heller, Mathias C. Walter, Thomas Rattei, Daniel R. Mende, Shinichi Sunagawa, Michael Kuhn, Lars Juhl Jensen, Christian von Mering, and Peer Bork. Nucl. Acids Res. (04 January 2016) 44 (D1): D286-D293. doi: 10.1093/nar/gkv1248