Pinned Repositories
3D-transformation-for-Ewe
3D_transformation
4-RNA-seq
A slurm based schema for RNA-seq analysis to execute on linux clusters.
awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
CeTF
Repository for R package with an implementation of PCIT and RIF algorthms.
DEApp
DEAPP shiny App
deseq2shiny
a web-based R shiny application that wraps DESeq2 R package
HumanBreast10X
R code for 10.15252/embj.2020107333 paper
Morita_et_al_2021
NASQAR
NASQAR: A web-based platform for High-throughput sequencing data analysis and visualization
sqianglan's Repositories
sqianglan/3D-transformation-for-Ewe
sqianglan/3D_transformation
sqianglan/4-RNA-seq
A slurm based schema for RNA-seq analysis to execute on linux clusters.
sqianglan/awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
sqianglan/CeTF
Repository for R package with an implementation of PCIT and RIF algorthms.
sqianglan/DEApp
DEAPP shiny App
sqianglan/deseq2shiny
a web-based R shiny application that wraps DESeq2 R package
sqianglan/HumanBreast10X
R code for 10.15252/embj.2020107333 paper
sqianglan/Morita_et_al_2021
sqianglan/NASQAR
NASQAR: A web-based platform for High-throughput sequencing data analysis and visualization
sqianglan/public-scripts-Wang2020-branching-morphogenesis
sqianglan/pyclesperanto_prototype
http://clesperanto.net
sqianglan/seuratv3wizard
A web-based interactive (wizard style) application to perform a guided single-cell RNA-seq data analysis and clustering based on Seurat v3
sqianglan/stardist
StarDist - Object Detection with Star-convex Shapes
sqianglan/VollSeg
Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Available via pip package vollseg.