Pinned Repositories
FQF
FastQForward implementation of the of the UGP/UCGD pipeline
go-vmc
Go library and toolkit using the VMC Data model for exchanging sequence variation.
NICUWatch
Public Version of the UCGD NICUWatch Pipeline
Salvo
Slurm command and job launcher
UGPp
UGPp
vmccl
Command line lightweight implementation of the VMC SHA-512 algorithm
srynobio's Repositories
srynobio/NICUWatch
Public Version of the UCGD NICUWatch Pipeline
srynobio/Salvo
Slurm command and job launcher
srynobio/FQF
FastQForward implementation of the of the UGP/UCGD pipeline
srynobio/UGPp
UGPp
srynobio/go-vmc
Go library and toolkit using the VMC Data model for exchanging sequence variation.
srynobio/vmccl
Command line lightweight implementation of the VMC SHA-512 algorithm
srynobio/BioTools
Collection of Bioinformatic tools.
srynobio/CalliNGS-NF
GATK RNA-Seq Variant Calling in Nextflow
srynobio/clingen-data-model
Documentation for data model of ClinGen
srynobio/Clinomic
Moose based perl libraray to create clinical genomic files from GVF, and VCF files.
srynobio/CVDO
Collection of script and CVDO.sh used to build the Cardiovascular Disease Ontology
srynobio/eight-letters
Eight Letters, Most Words
srynobio/gobyexample
srynobio/gqt
A genotype query interface.
srynobio/graphite
Graphite - Graph-based variant adjudication
srynobio/GVF-Variant
Perl scripts to upload database with GVF, 1000Genome and Cosmic file
srynobio/Heimdall
Package for the monitoring and administration of UGP-GNomEx and UGP/UCGD analysis pipelines.
srynobio/IOBO
IOBO Images to Ontologies.
srynobio/jibe
Simple validation tool used to compare two versions of a VCF file.
srynobio/Rex
A framework for server orchestration and to simplify system administration
srynobio/sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
srynobio/ServerTools
Collection of scripts to help in server maintenance.
srynobio/VAAST-wiki
VAAST/pVAAST Documentation and Wiki.
srynobio/vcflib
a simple C++ library for parsing and manipulating VCF files, + many command-line utilities