sscien

Researcher at Washington University School of Medicine

Pinned Repositories

cptac-driver
Language:Jupyter Notebook00
cptac_methylation
Methylation array analysis pipeline for CPTAC
Language:R00
docker-stata
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Fusion_hg38
Ding lab fusion hg38 Katmai pipeline
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HTAN_bulkRNA_expression
pipeline for HTAN bulk RNA-Seq data quantification
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MAESTER_WDL
WDL for MAESTER
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MSI_hg38
Ding Lab MSIsensor hg38 katmai pipeline
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msisensor
microsatellite instability detection using tumor only or paired tumor-normal data
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neoantigen-pipeline
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PanCan_snATAC_publication
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sscien's Repositories

sscien/cptac-driver
Language:Jupyter Notebook00
sscien/cptac_methylation
Methylation array analysis pipeline for CPTAC
Language:R00
sscien/docker-stata
Language:Shell00
sscien/Fusion_hg38
Ding lab fusion hg38 Katmai pipeline
Language:Python0 0 00
sscien/HTAN_bulkRNA_expression
pipeline for HTAN bulk RNA-Seq data quantification
Language:HTML0 0 00
sscien/MAESTER_WDL
WDL for MAESTER
Language:WDL00
sscien/MSI_hg38
Ding Lab MSIsensor hg38 katmai pipeline
Language:Python0 0 01
sscien/msisensor
microsatellite instability detection using tumor only or paired tumor-normal data
Language:C++00
sscien/neoantigen-pipeline
Language:Shell00
sscien/PanCan_snATAC_publication
Language:Jupyter Notebook0 0 00
sscien/pecgs-pipeline
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sscien/plotplot
sscien/Single_Cell
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sscien/SurvivalGenie
SurvivalGenie for validation purpose
sscien/TeamMembers
sscien/Variant-Calling
Language:Shell
sscien/vcf2maf
Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms
sscien/vicckb
python module for querying the vicc knowledgebase integration datastore
Language:Jupyter Notebook0 0
sscien/WUDocker
Utilities for launching docker in various Washington University environments
Language:Shell0 0