Pinned Repositories
ascatNgs
Somatic copy number analysis using WGS paired end wholegenome sequencing
cptac-driver
cptac_methylation
Methylation array analysis pipeline for CPTAC
docker-stata
Fusion_hg38
Ding lab fusion hg38 Katmai pipeline
HTAN_bulkRNA_expression
pipeline for HTAN bulk RNA-Seq data quantification
MAESTER_WDL
WDL for MAESTER
MSI_hg38
Ding Lab MSIsensor hg38 katmai pipeline
msisensor
microsatellite instability detection using tumor only or paired tumor-normal data
neoantigen-pipeline
sscien's Repositories
sscien/cptac-driver
sscien/cptac_methylation
Methylation array analysis pipeline for CPTAC
sscien/docker-stata
sscien/Fusion_hg38
Ding lab fusion hg38 Katmai pipeline
sscien/HTAN_bulkRNA_expression
pipeline for HTAN bulk RNA-Seq data quantification
sscien/MAESTER_WDL
WDL for MAESTER
sscien/MSI_hg38
Ding Lab MSIsensor hg38 katmai pipeline
sscien/msisensor
microsatellite instability detection using tumor only or paired tumor-normal data
sscien/neoantigen-pipeline
sscien/PanCan_snATAC_publication
sscien/pecgs-pipeline
sscien/plotplot
sscien/Single_Cell
sscien/SurvivalGenie
SurvivalGenie for validation purpose
sscien/TeamMembers
sscien/Variant-Calling
sscien/vcf2maf
Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms
sscien/vicckb
python module for querying the vicc knowledgebase integration datastore
sscien/WUDocker
Utilities for launching docker in various Washington University environments