Pinned Repositories
35ajstern.github.io
ASMC
Ascertained Sequentially Markovian Coalescent
clues
Coalescent Likelihood Under Effects of Selection - Inferring selection & allele frequency trajectories from nucleotide data
clues-v0
Approximate full likelihood inference of selection / inferring allele frequency trajectories
deep-learning-projects
Collection of code and notebooks implementing small deep learning examples/project in tensorflow/keras.
discoal
[this fork prints trajectories] discoal is a coalescent simulation program capable of simulating models with recombination, selective sweeps, and demographic changes including population splits, admixture events, and ancient samples
h2-selection
MajorScalesPlots
color-coded plots of the major scales
palm
Polygenic Adaptation Likelihood Method - Inferring natural selection on complex traits from whole-genome genealogies
reproduce_sor_2016
Code and notebooks for review of Pitt et al, 2016
standard-aaron's Repositories
standard-aaron/clues
Coalescent Likelihood Under Effects of Selection - Inferring selection & allele frequency trajectories from nucleotide data
standard-aaron/palm
Polygenic Adaptation Likelihood Method - Inferring natural selection on complex traits from whole-genome genealogies
standard-aaron/clues-v0
Approximate full likelihood inference of selection / inferring allele frequency trajectories
standard-aaron/reproduce_sor_2016
Code and notebooks for review of Pitt et al, 2016
standard-aaron/35ajstern.github.io
standard-aaron/ASMC
Ascertained Sequentially Markovian Coalescent
standard-aaron/deep-learning-projects
Collection of code and notebooks implementing small deep learning examples/project in tensorflow/keras.
standard-aaron/discoal
[this fork prints trajectories] discoal is a coalescent simulation program capable of simulating models with recombination, selective sweeps, and demographic changes including population splits, admixture events, and ancient samples
standard-aaron/h2-selection
standard-aaron/MajorScalesPlots
color-coded plots of the major scales
standard-aaron/ldsc
LD Score Regression (LDSC)
standard-aaron/mullets
multi-locus time-series analysis
standard-aaron/ohana_simulation_models
standard-aaron/palm_56_traits
standard-aaron/pyslim_ssvs
scripts for simulating ssvs using tree sequences in msprime/slim.
standard-aaron/rhemc
standard-aaron/rhps_coalescent
Code associated with the paper "Reconstructing the history of polygenic scores using coalescent trees" by M.D. Edge and G. Coop.
standard-aaron/spaceness
Space is the Place: Effects of Continuous Spatial Structure on Analysis of Population Genetic Data
standard-aaron/stratification