standard-aaron

standard-aaron's Stars

• bulik/ldsc

  LD Score Regression (LDSC)

  Language:Python64127411342

• tskit-dev/msprime

  Simulate genealogical trees and genomic sequence data using population genetic models

  Language:Python176191k88

• kr-colab/discoal

  discoal is a coalescent simulation program capable of simulating models with recombination, selective sweeps, and demographic changes including population splits, admixture events, and ancient samples

  Language:TeX4832510

• tskit-dev/pyslim

  Tools for dealing with tree sequences coming to and from SLiM.

  Language:Python27620423

• standard-aaron/clues

  Coalescent Likelihood Under Effects of Selection - Inferring selection & allele frequency trajectories from nucleotide data

  Language:Python254125

• yakirr/sldp

  Signed LD profile regression code

  Language:Python174126

• mjhubisz/argweaver

  Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)

  Language:C++13604

• standard-aaron/clues-v0

  Approximate full likelihood inference of selection / inferring allele frequency trajectories

  Language:Python7111

• dekoning-lab/wfes

  Wright-Fisher Exact Solver

  Language:C5711

• standard-aaron/reproduce_sor_2016

  Code and notebooks for review of Pitt et al, 2016

  Language:Jupyter Notebook3401

• ammodramus/discoal

  (fork with minor changes to output) discoal is a coalescent simulation program capable of simulating model with recombination, selective sweeps, and demographic changes including population splits, admixture events, and ancient samples. This is a minor fork that changes the output slightly.

  Language:TeX1300