Imputation aborted
Closed this issue · 4 comments
Hi,
I'm using Minimac4 for imputation with 1000 Genomes reference panel. While I could impute all other chromosomes successfully, I get this error when imputing chromosome 10:
"minimac4: /build/minimac4-1KJ7yD/minimac4-1.0.2/src/MarkovModel.cpp:1085: void MarkovModel::unfoldProbabilities(int, std::vector&, std::vector&, std::vector&, int, std::vector&, int): Assertion `adj_norec[i]<1e18' failed.
Aborted (core dumped)"
The reading of input file and reference panel file is done successfully, as well as chunking. The error happens when starting imputation.
Do you know what it means and how can I solve it?
Thank you very much,
Alba
This is fixed in the master branch. Please download from https://github.com/statgen/Minimac4/archive/refs/heads/master.zip
Thank you, it works now!
@jonathonl could this fix be tagged in a release build of minimac4? Its nice to have a tracked and working version that isn't just the current master branch if possible.
@abiddanda54gene, I just created a release: https://github.com/statgen/Minimac4/releases/tag/v1.0.3.