Center for Statistical Genetics
The Center for Statistical Genetics at the University of Michigan School of Public Health
Ann Arbor, MI
Pinned Repositories
bamUtil
demuxlet
Genetic multiplexing of barcoded single cell RNA-seq
libStatGen
Useful set of classes for creating statistical genetic programs.
locuszoom
A Javascript/d3 embeddable plugin for interactively visualizing statistical genetic data from customizable sources.
locuszoom-standalone
Create regional association plots from GWAS or meta-analysis
METAL
Meta-analysis of genomewide association scans
Minimac4
pheweb
A tool to build a website to browse hundreds or thousands of GWAS.
popscle
A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and auxilary tools
SLURM-examples
Center for Statistical Genetics's Repositories
statgen/pheweb
A tool to build a website to browse hundreds or thousands of GWAS.
statgen/demuxlet
Genetic multiplexing of barcoded single cell RNA-seq
statgen/Minimac4
statgen/libStatGen
Useful set of classes for creating statistical genetic programs.
statgen/METAL
Meta-analysis of genomewide association scans
statgen/savvy
Interface to various variant calling formats.
statgen/topmed_variant_calling
statgen/LDServer
Fast API server for calculating linkage disequilibrium
statgen/encore
Encore Analysis Server
statgen/raremetal
A flexible tool for meta-analysis
statgen/ruth
Robust Unified Hardy-Weinberg Equilibrium Test
statgen/imputationserver
TOPMED Imputation Server: A new web-based service for imputation that facilitates access to new reference panels and greatly improves user experience and productivity
statgen/encore-client-r
An R package to interact with the Encore analysis server
statgen/hds-util
statgen/bravo_api
Server side data processing and retrieval endpoints for BRAVO
statgen/bravo-infrastructure
Provisioning and deployment of example BRAVO vignette.
statgen/bravo_data_prep
Work flows and tools to create data that backs the BRAVO API.
statgen/bravo_vue
BRAVO's Vue JS based UI.
statgen/terraform-aws-imputation-server
A set of Terraform Modules for deploying an imputation server on AWS
statgen/ansible-bravo-deploy
Anisble deployment roles and playbook for BRAVO API and UI
statgen/bravo_ui
Front end to navigate and visualize results from BRAVO API
statgen/cloudgene
A framework to build Software As A Service (SaaS) platforms for data analysis pipelines.
statgen/di2hap
A tool for converting diploid geontypes to haploid.
statgen/EPID731_2024
statgen/nextflow-sc_dge
statgen/nullmetal
statgen/rand-recom
Tool for randomly applying artificial recombination
statgen/telomere-length-pipeline
A cloud-based pipeline to estimate telomere lengths from WGS data using Telseq
statgen/topmed-methylation-qtl
PIpeline for TOPMed methylation QTL analysis.
statgen/vuptool
Tool for detecting and handling genomic variant under methylation probes