statgen/raremetal

Issues

• ERROR: Found 0 phenotyped AND genotyped individuals from 0 families

  #44 opened a year ago by estelabruxel
  0

• question about columns in output file

  #43 opened a year ago by karens99
  1

• Installation error

  #42 opened a year ago by DanielEWeeks
  3

• different SKAT results

  #41 opened 2 years ago by smhaider
  0

• Run single variant meta-analysis without aggregation tests

  #24 opened 4 years ago by welchr
  1

• Gene level summary stats only

  #40 opened 2 years ago by oalavijeh
  0

• Download failed with error 404 for: //zlib.net/zlib-1.2.11.tar.gz

  #39 opened 2 years ago by tvanerp
  5

• Bus error

  #38 opened 2 years ago by rainbow218
  0

• different p-values

  #37 opened 2 years ago by smhaider
  0

• Different number of samples with Raremetal aggregation test

  #36 opened 2 years ago by smhaider
  0

• Instalation fails

  #34 opened 2 years ago by maxozo
  2

• issue to use cget install -f requirements.txt

  #33 opened 3 years ago by Bochao1
  18

• Exiting, exception thrown: std::bad_alloc

  #32 opened 3 years ago by Navin-techi
  1

• Raremetal filter out all the variants

  #31 opened 3 years ago by stefanucci-luca
  17

• Additional meta-analysis test cases before next release

  #28 opened 4 years ago by welchr
  0

• Add travis & status checks for master, develop branches

  #29 opened 4 years ago by welchr
  0

• --altMAF required to get correct allele frequency

  #25 opened 4 years ago by welchr
  1

• Multiallelic variant causes rest of VCF to be skipped

  #7 opened 6 years ago by welchr
  2

• Run single variant and aggregation tests only within region

  #26 opened 4 years ago by welchr
  1

• Implement SKAT-O

  #27 opened 4 years ago by welchr
  0

• Increase p-value precision

  #23 opened 4 years ago by welchr
  0

• Truncation from double to integer results in skipping some singleton/rare variants

  #4 opened 7 years ago by welchr
  5

• Output additional statistics to support QC

  #20 opened 5 years ago by abought
  0

• Add custom filters

  #22 opened 4 years ago by welchr
  0

• Common covariance matrix file for different phenotypes for same set of samples

  #21 opened 5 years ago by suraj86nong
  0

• --dosage ignored in raremetal due to parameter ambiguity

  #3 opened 7 years ago by welchr
  1

• single variant score test meta-analyses

  #8 opened 6 years ago by winkusch
  0

• Annotated VCF not correctly read in

  #14 opened 5 years ago by wyoungj
  3

• Negative p-values in VT results

  #15 opened 5 years ago by abought
  0

• Using RAREMETAL Results as Inputs for another RAREMETAL run

  #17 opened 5 years ago by jdarias93
  0

• libgsl.so.23: cannot open shared object file

  #18 opened 5 years ago by maojn
  1

• Covariates are used only when --makeResiduals flag is on

  #19 opened 5 years ago by achilleasNP
  2

• Fatal Error: No valid groups

  #16 opened 5 years ago by jdarias93
  4

• make error during raremetal build from source

  #10 opened 5 years ago by domaniqs
  17

• raremetal gene-based tests fail when using cov matrices output by rvtests

  #12 opened 5 years ago by gjmzajac
  3

• Define 4.15.0 release criteria

  #5 opened 6 years ago by abought
  2

• Object files in a git tree

  #9 opened 6 years ago by ersereik
  2

• problems with building developer version 4.14.1 on Centos 7

  #11 opened 6 years ago by domaniqs
  0