Pinned Repositories
LDServer
Fast API server for calculating linkage disequilibrium
locuszoom-api
Flask server code for LocusZoom APIs
locuszoom-standalone
Create regional association plots from GWAS or meta-analysis
raremetal
A flexible tool for meta-analysis
raremetal.js
JS implementation of rare variant aggregation tests
swiss
Software to help identify overlap between association scan results and GWAS hit catalogs.
csg-jupyter-tutorial
A quick tutorial on using the jupyter notebook for CSG users.
csg-snakemake
Tech Talk for Snakemake
snipper
A program for quickly researching genes and other genomic features near disease-associated regions of the genome (from GWAS or sequencing studies.)
welchr's Repositories
welchr/csg-snakemake
Tech Talk for Snakemake
welchr/snipper
A program for quickly researching genes and other genomic features near disease-associated regions of the genome (from GWAS or sequencing studies.)
welchr/csg-jupyter-tutorial
A quick tutorial on using the jupyter notebook for CSG users.
welchr/apex
Toolkit for QTL mapping and meta-analysis.
welchr/as241
welchr/cget
C++ package retrieval
welchr/csg-learning
Learning materials for CSG
welchr/example
example
welchr/fusion_github_test
welchr/gwas-credible-sets
Credible set determination in GWAS results
welchr/htslib
C library for high-throughput sequencing data formats
welchr/iterate_bgen
Example of iterating over bgen file
welchr/libRmath.js
Javascript Pure Implementation of Statistical R "core" numerical libRmath.so
welchr/locuszoom
A Javascript/d3 embeddable plugin for interactively visualizing statistical genetic data from customizable sources.
welchr/METAL
Meta-analysis of genomewide association scans
welchr/mvtnorm.js
Multivariate normal cumulative distribution function compiled to JS/WASM
welchr/SLURM-examples
welchr/tabixpp
C++ wrapper to tabix indexer
welchr/tensorqtl
Ultrafast GPU-enabled QTL mapper
welchr/test-travis
welchr/VARV
welchr/welchr